Helmut Schiessel
Gastonderzoeker
- Naam
- Prof.dr. H. Schiessel
- Telefoon
- +31 71 527 2727
- schiessel@lorentz.leidenuniv.nl
- ORCID iD
- 0000-0001-5040-6488
Meer informatie is beschikbaar op de Engelse profielpagina.
Meer informatie over Helmut Schiessel
Nieuws
In de media
Gastonderzoeker
- Wiskunde en Natuurwetenschappen
- Leiden Instituut Onderzoek Natuurkunde
- LION - Theoretical Physics
- Yadav M., Zuiddam M. & Schiessel H. (2023), The role of transcript regions and amino acid choice in nucleosome positioning, NAR Genomics and Bioinformatics 5(3): lqad080.
- Scalvini B., Schiessel H., Golonev A. & Mashaghi Tabari A. (2022), Circuit topology analysis of cellular genome reveals signature motifs, conformational heterogeneity, and scaling, iScience 25(3): 103866.
- Neipel J., Brandani G. & Schiessel H. (2020), Translational nucleosome positioning: a computational study, Physical Review E 101(2): 022405.
- Schiessel H. & Blossey R. (2020), Pioneer transcription factors in chromatin remodeling: the kinetic proofreading view, Physical Review E 101(4): 040401(R).
- Deelen K. van Schiessel H. Bruin L. de (2020), Ensembles of breathing nucleosomes: a computational study, Biophysical Journal 118(9): 2297-2308.
- Heidari M. Schiessel H. Mashaghi A. (2020), Circuit Topology Analysis of Polymer Folding Reactions, ACS Central Science 6(6): 839-847.
- Blossey R. & Schiessel H. (2019), Histone mark recognition controls nucleosome translocation via a kinetic proofreading mechanism: Confronting theory and high-throughput experiments, Physical Review E 99(6): 060401.
- Blossey R. & Schiessel H. (2019), Chromatin remodelers as active Brownian dimers, Journal of Physics A: Mathematical and Theoretical 52(8): 085601.
- Yamamoto T., Sakaue T. & Schiessel H. (2019), Loop extrusion drives very different dynamics for Rouse chains in bulk solutions and at interfaces, Europhysics Letters 127(3): 38002.
- Zuiddam M. & Schiessel H. (2019), Shortest paths through synonymous genomes, Physical Review E 99(1): 012422.
- Yamamoto T. & Schiessel H. (2019), Dilution of contact frequency between superenhancers by loop extrusion at interfaces, Soft Matter 15(38): 7635-7643.
- Schiessel H. (2019), How to Read and Write Mechanical Information in DNA Molecules, Biophysical Journal 116(3): 171A-171A.
- Onufriev A.V. & Schiessel H. (2019), The nucleosome: From structure to function through physics, Current Opinion in Structural Biology 56: 119-130.
- Yamamoto T. & Schiessel H. (2019), Dilution of contact frequency between superenhancers by loop extrusion at interfaces, Soft Matter 15(38): 7635-7643.
- Blossey R. & Schiessel H. (2018), The latest twists in chromatin remodeling, Biophysical Journal 114(10): 2255-2261.
- Sazer P. & Schiessel H. (2018), The biology and polymer physics underlying large-scale chromosome organization, Traffic 19(2): 87-104.
- Schiessel H. (2018), Telling left from right in breathing nucleosomes, Biophysical Journal 115(5): 749-750.
- Culkin J., Bruin L. de, Tompitak M., Phillips R. & Schiessel H. (2017), The role of DNA sequence in nucleosome breathing, European Physical Journal E 40: 106.
- Tompitak M., Barkema G.T. & Schiessel H. (2017), Benchmarking and refining probability-based models for nucleosome-DNA interaction, BMC Bioinformatics 18: 157.
- Tompitak M., Bruin L. de, Eslami Mossallam B. & Schiessel H. (2017), Designing nucleosomal force sensors, Physical Review E 95: 052402.
- Tompitak M., Vaillant C. & Schiessel H. (2017), Genomes of multicellular organisms have evolved to attract nucleosomes to promotor regions, Biophysical Journal 112(3): 505-511.
- Wondergem A.J., Schiessel H. & Tompitak M. (2017), Performing SELEX experiments in silico, The Journal of Chemical Physics 147: 174101.
- Yamamoto T. & Schiessel H. (2017), Osmotic mechanism of the loop extrusion process, Physical Review E 96: 030402.
- Yamamoto T. & Schiessel H. (2017), Transcription dynamics stabilizes nucleus-like layer structure in chromatin brush, Soft Matter 13: 5307-5316.
- Yamamoto T. & Schiessel H. (2017), Chromatin gels are auxetic due to cooperative nucleosome assembly and disassembly dynamics, Europhysics Letters 118: 28003.
- Zuiddam M., Everaers R. & Schiessel H. (2017), Physics behind the mechanical nucleosome positioning code, Physical Review E 96: 052412.
- Schiessel H. & Schram R.D. (2016), Exact enumeration of Hamiltonian walks on the 4 x4 cube and applications to protein folding (Corrigendum for vol 46, 485001, 2013), Journal of Physics A: Mathematical and Theoretical 49: 369501.
- Tompitak M., Mossalam B.E., Barkema G.T. & Schiessel H. (2016), Can Markov chain models predict nucleosome positioning?, Biophysical Journal 110(3): 404A.
- Bruin L. de, Tompitak T., Eslami Mossallam B. & Schiessel H. (2016), Why do nucleosomes unwrap asymmetrically?, Journal of Physical Chemistry B 94: 104402.
- Eslami Mossallam B., Schiessel H. & Noort S.J.T. van (2016), Nucleosome dynamics: Sequence matters, Advances in Colloid and Interface Science 232: 101-113.
- Eslami-Mossallam B., Schram R.D., Tompitak M., Noort S.J.T. van & Schiessel H. (2016), Multiplexing genetic and nucleosome positioning codes: A computational approach, 11(6): 0156905.
- Yamamoto T. & Schiessel H. (2016), Transcription driven phase separation in chromatin brush, Langmuir 2016(32): 3036-3044.
- Everaers R. & Schiessel H. (2015), The physics of chromatin, Journal of Physics-Condensed Matter 27(060301): .
- Fathizadeh A., Schiessel H. & Ejtehadi M.R. (2015), Molecular dynamics simulation of supercoiled DNA rings, Macromolecules 48(1): 164-172.
- Schram R.D., Klinker H., Becker P.B. & Schiessel H. (2015), Computational study of remodeling in a nucleosomal array, European Physical Journal E 38: 85.
- Tompitak M., Mossallam B.E., Barkema G. & Schiessel H. (2015), Sequence dependent plectoneme dynamics, Biophysical Journal 108(392A): .
- Lenz L., Hoenderdos M., Prinsen P. & Schiessel H. (2015), The influence of DNA shape fluctuations on fluorescence resonance energy transfer efficiency measurements in nucleosomes, Journal of Physics-Condensed Matter 27(064104): .
- Walter J.-C., Baiesi M., Carlon E. & Schiessel H. (2014), Unwinding dynamics of a helically wrapped polymer, Macromolecules 47: 4840-4846.
- Schram R.D., Barkema G.T. & Schiessel H. (2013), On the stability of fractal globules, The Journal of Chemical Physics 138(224901): .
- Fathizadeh A., Besya A.B., Ejtehadi M.R. & Schiessel H. (2013), Rigid-body molecular dynamics of DNA inside a nucleosome, European Physical Journal E 36(21): .
- Opheusden B. van, Redig F. & Schiessel H. (2013), A Markov model for the dynamics of the nucleosome, Journal of Physics A: Mathematical and Theoretical 46(095005): .
- Emanuel M.D., Lanzani G. & Schiessel H. (2013), Multiplectoneme phase of double-stranded DNA under torsion, Physical Review E 88(2): 022706.
- Driessen R.P.C., Meng H., Suresh G., Shahapure R., Lanzani G., Priyakumar U.D., White M.F., Schiessel H., Noort S.J.T. van & Dame R.T. (2013), Crenarchaeal chromatin proteins Cren7 and Sul7 compact DNA by inducing rigid bends, Nucleic Acids Research 41(1): 196-205.
- Florescu A.M., Schiessel H. & Blossey R. (2012), Kinetic control of nucleosome displacement by ISWI/ACF chromatin remodelers, Physical Review Letters 109(11): 118103.
- Schiessel H., Correa-Rodriguez M.D., Rudiuk S., Baigl D. & Yoshikawa K. (2012), Theory of DNA-cationic micelle complexation, 8: 9406-9411.
- Lanzani G. & Schiessel H. (2012), Out of register: How DNA determines the chromatin fiber geometry, Europhysics Letters 97: .
- Mollazadeh-Beidokhti L., Mohammad-Rafiee F. & Schiessel H. (2012), Nucleosome dynamics between tension-induced states, Biophysical Journal 102: 2235-2240.
- Blossey R. & Schiessel H. (2011), The dynamics of the nucleosome: thermal effects, external forces and ATP, FEBS Journal 278: 3619-3632.
- Blossey R. & Schiessel H. (2011), Kinetic Proofreading in Chromatin Remodeling: The Case of ISWI/ACF, Biophysical Journal 101(L30-L32): .
- Dame R.T., Tark-Dame M. & Schiessel H. (2011), A physical approach to segregation and folding of the Caulobacter crescentus genome, Molecular Microbiology 82(6): 1311-1315.
- Schiessel H. (red.) (2010), . European Physical Journal E.
- Schiessel H. (red.) (2010), . Physical Review E.
- Mollazadeh-Beidokhti L., Mohammad-Rafiee F. & Schiessel H. (2009), Active nucleosome displacement: a theoretical approach, Biophysical Journal 96(11): 4387-4398.
- Mollazadeh-Beidokhti L., Deseigne J., Lacoste D., Mohammad-Rafiee F. & Schiessel H. (2009), Stochastic model for nucleosome sliding under an external force, Physical review E 79(3)(031922): .
- Emanuel M.D., Radja N.H., Henriksson A. & Schiessel H. (2009), The physics behind the larger scale organization of DNA in eukaryotes, Physical Biology 2: .
- Depken M. & Schiessel H. (2009), Nucleosome shape dictates chromatin fiber structure, Biophysical Journal 96(3): 777-784.
- Blossey R. & Schiessel H. (2008), Kinetic proofreading of gene activation by chromatin remodeling, HFSP JOURNAL 2(3): 167-170.
- Emanuel M.D., Mohrbach H.R.J., Sayar M., Schiessel H. & Kulic I.M. (2007), Buckling of stiff polymers: Influence of thermal fluctuations, Physical Review E 76(6): 1-13.
- Thaokar R., Schiessel H. & Kulic I.M. (2007), Hydrodynamics of a rotating torus, The European Physical Journal B 60(3): 325-336.
- Kulic I.M., Mohrbach H.R.J., Thaokar R. & Schiessel H. (2007), Equation of state of looped DNA, Physical Review E 75(1): .
- Muhlbacher F., Schiessel H. & Holm C. (2006), Tail-induced attraction between nucleosome core particles, Physical Review E 74(3): .
- Kulic I.M., Thaokar R. & Schiessel H. (2006), From sliding nucleosomes to twirling DNA motors, Journal of Computational and Theoretical Nanoscience 3: 912-921.
- Muhlbacher F., Holm C. & Schiessel H. (2006), Controlled DNA compaction within chromatin: The tail-bridging effect, Europhysics Letters 73(1): 135-141.
- Schiessel H. (2006), The nucleosome: A transparent, slippery, sticky and yet stable DNA-protein complex, European Physical Journal E 19(3): 251-262.
- Kulic I.M., Thaokar R. & Schiessel H. (2005), Twirling DNA rings - Swimming nanomotors ready for a kickstart, Europhysics Letters 72(4): 527-533.
- Bagatella-Flores N., Schiessel H. & Gelbart W.M. (2005), Statics and dynamics of polymer-wrapped colloids, Journal of Physical Chemistry B 109(45): 21305-21312.
- Kulic I.M., Thaokar R. & Schiessel H. (2005), A DNA ring acting as a thermal ratchet, Journal of Physics: Condensed Matter 17(47): .