Aimee Boyle
Assistant professor / Guest
- Name
- Dr. A.L. Boyle
- Telephone
- +31 71 527 2727
- a.l.boyle@lic.leidenuniv.nl
- ORCID iD
- 0000-0003-4176-6080
Aimee Boyle creates metal-binding peptides and proteins with the aim of investigating their structural properties and exploring their potential functions. At a fundamental level, the effects of metal-binding on peptide folding (and vice versa) are probed and applications of these metal-containing biomolecules in areas such as catalysis, biosensing, and antibacterial coatings are explored.
Biography
Aimee Boyle was born in the UK. In 2008 she graduated from the University of Southampton (UK) with an MChem in Chemistry with Medicinal Sciences. During her studies she completed a six-month research internship at Nanyang Technological University in Singapore where she investigated the structural properties of two self-assembling, cage-like proteins. This project initiated her fascination with the assembly pathways of peptides and proteins.
In September 2008 she moved to the University of Bristol (UK) to begin a PhD with Professor Dek Woolfson. The PhD focused on the design and self-assembly of coiled-coil peptides, investigating how to form coiled coils with differing oligomer states and also how to join them together with short peptidic linkers to generate closed nanostructures of defined, varying sizes.
In 2013 she moved to Leiden and worked as a postdoc in the Supramolecular and Biomaterials Chemistry group of Alexander Kros. Here, she contributed to several projects including a collaborative effort with other groups in Leiden University studying ways in which to coat gold nanorods with targeting peptides for single-molecule tracking in vitro. She also studied model systems for membrane fusion, focusing on understanding coiled-coil mediated liposome fusion.
In 2015 she was awarded a VENI fellowship, which enabled her to begin her own research line. She started to design and characterise metallopeptides in order to investigate their metal-binding selectivity and the effects metal-binding has on peptide folding.
In January 2020 she became as Assistant Professor and moved to the Macromolecular Biochemistry (MacBio) group at Leiden University. Here, she continues her research into metal-binding peptides but is also expanding into the protein universe. She is also beginning to investigate the applications of metallopeptides and proteins as, amongst other things, biosensors and antibacterial agents. For more information about her current research projects, please see her research page.
Curriculum Vitae
Personal information
Nationality: British
Date of birth: 25 May 1985
Education
2013 PhD, School of Chemistry, Bristol University, UK. Thesis title: ‘The de novo design, synthesis, and characterization of peptide-based nanostructures"
Thesis Supervisor: Prof. D.N. Woolfson
2008 MChem, Chemistry and Medicinal Science, School of Chemistry, Southampton University, UK
Current and previous research positions
2020 – now Assistant Professor, Leiden Institute of Chemistry, Leiden University, The Netherlands
2013 – 2019 Postdoctoral researcher (Veni), Leiden Institute of Chemistry, Leiden University (Prof. Alexander Kros)
Contribution to teaching and supervision
- MSc courses: "Protein Folding, Misfolding and Design" and "Academic Writing"
- BSc BFW course: "Biochemie 1"
(Co-)supervision of 8 PhD students since 2016.
Other responsibilities since 2016
- Reviewer for Journal of the American Chemical Society, Scientific Reports, Chemical Science, Angewandte Chemie, and others
Publication record including five recent representative publications
42 papers with >2500 citations, H-index 23 (Google Scholar, 2023)
Full publication record: Leiden University, Google Scholar
- AL Boyle, M Rabe, NSA Crone, GG Rhys, N Soler, P Voskamp, NS Pannu, A Kros. ‘Selective coordination of three transition metal ions within a coiled-coil scaffold.’ Chem. Sci. 2019. 31 (10): 7456-7465. DOI: 10.1039/C9SC01165J
- NSA Crone, A Kros, AL Boyle. ‘Modulation of coiled-coil binding strength and fusogenicity though peptide stapling.’ Bioconjug. Chem. 2020. 31 (3): 834-843. DOI: 10.1021/acs.bioconjchem.0c00009
- EA Egorova, MMJ van Rijt, N Sommerdijk, GS Gooris, JA Bouwstra, AL Boyle, A Kros. ‘One peptide for them all: gold nanoparticles of different sizes are stabilized by a common peptide amphphile.’ ACS Nano, 2020. 14 (5): 5874-5886. DOI: 10.1021/acsnano.0c01021
- MJ Schen, RCL Olsthoorn, Y Zeng, T Bakkum, A Kros, AL Boyle. ‘Magnetic-activated cell sorting using coiled-coil peptides: an alternative strategy for isolating cells with high efficiency and specificity.’ ACS Appl. Mater. Interfac. 2021. 13 (10): 11621-11630. DOI: 10.1021/acsami.0c22185
- NSA Crone, N van Hilten, A van der Ham, HJ Risselada, A Kros, AL Boyle. ‘Azobenzene-based amino acids for the photocontrol of coiled-coil peptides.’ Bioconjug. Chem. 2023. 34 (2): 345-357. DOI: 10.1021/acs.bioconjchem.2c00534
Presentations including five presentations at international conferences since 2016
- Dutch peptide symposium (The Netherlands, April 2023)
- 1st International conference on metal binding peptides (France, July 2022)
- 1st EPS online peptide symposium (July 2021)
- Coiled coils, collagen, and fibrous proteins (Austria, September 2017)
- 34th European Peptide Symposium (Germany, September 2016)
Assistant professor / Guest
- Science
- Leiden Institute of Chemistry
- LIC/Chemical Biology
- LIC/CB/Macromolecular Biochemistry
- Sun J., Boyle A.L., Brünle S. & Ubbink M. (2024), A low-barrier proton shared between two aspartates acts as a conformational switch that changes the substrate specificity of the β-lactamase BlaC, International Journal of Biological Macromolecules 278: 134665.
- Zeng Y., Shen M., Singhal A., Sevink G.J.A., Crone N.S.A., Boyle A.L. & Kros A. (2023), Enhanced liposomal drug delivery via membrane fusion triggered by dimeric coiled‐coil peptides, Small 19(37): 2301133.
- Zeng Y., Shen M., Pattipeiluhu R., Zhou X., Zhang Y., Bakkum T., Sharp T., Boyle A.L. & Kros A. (2023), Efficient mRNA delivery using lipid nanoparticles modified with fusogenic coiled-coil peptides, Nanoscale 15(37): 15206-15218.
- Borg G. van der, Crone N.S.A., Boyle A.L., Kros A. & Roos W.H. (2023), SNARE mimic peptide triggered membrane fusion kinetics revealed using single particle techniques, Physical Chemistry Chemical Physics 25(18): 13019-13026.
- Sun J., Chikunova A., Boyle A.L., Voskamp P., Timmer M. & Ubbink M. (2023), Enhanced activity against a third-generation cephalosporin by destabilization of the active site of a class A beta-lactamase, International Journal of Biological Macromolecules 250: 126160.
- Crone N.S. A., Hilten N. van, Ham A. van der, Risselada. H.J., Kros A. & Boyle A.L. (2023), Azobenzene-based amino acids for the photocontrol of coiled-coil peptides, Bioconjugate Chemistry 34(2): 345-357.
- Zhang X., Liu T., Boyle A.L., Bahreman A., Bao L., Jing Q., Xue H., Kieltyka R.E., Kros A., Schneider G.F. & Fu W. (2022), Dielectric-modulated biosensing with ultrahigh-frequency-operated graphene field-effect transistors, Advanced Materials 34(7): 2106666.
- Egorova E.A., Arias Alpizar G., Vlieg R.C., Gooris G.S., Bouwstra J.A., Noort S.J.T. van, Kros A. & Boyle A.L. (2022), Coating gold nanorods with self-assembling peptide amphiphiles promotes stability and facilitates in vivo two-photon imaging, Journal of Materials Chemistry B 10: 1612-1622.
- Zhang X., Liu T., Boyle A.L., Bahreman A., Jing Q., Xue H., Kieltyka R.E., Kros A., Schneider G.F. & Fu W. (2022), Dielectric‐modulated biosensing with ultrahigh‐frequency‐operated graphene field‐effect transistors, Advanced Materials 34(7): 2106666.
- Baumgartner L.-M., Erbe A., Boyle A.L. & Rabe M. (2022), Controlling amphipathic peptide adsorption by smart switchable germanium interfaces, Physical Chemistry Chemical Physics 24(8): 4809-4819.
- Egorova E., Lamers G.E.M., Abdolahpur Monikh F., Boyle A.L., Slütter B.A. & Kros A. (2022), Gold nanoparticles decorated with ovalbumin-derived epitopes: effect of shape and size on T-cell immune responses, RSC Advances 12(31): 19703-19716.
- Golysheva E.A., Boyle A.L., Biondi B., Ruzza P., Kros A., Raap J., Toniolo C. & Dzuba S.A. (2021), Probing the E/K peptide coiled-coil assembly by double electron-electron resonance and circular dichroism, Biochemistry 60(1): 19-30.
- Shen M.J., Olsthoorn R.C.L., Zeng Y., Bakkum T., Kros A. & Boyle A.L. (2021), Magnetic-activated cell sorting using coiled-coil peptides: an alternative strategy for isolating cells with high efficiency and specificity, ACS Applied Materials and Interfaces 13(10): 11621-11630.
- Egorova E., Gooris G.S., Luther P., Bouwstra J.A., Kros A. & Boyle A.L. (2021), Self-assembly of thiolated versus non-thiolated peptide amphiphiles, Peptide Science 113(6): e24236.
- Daudey G.A., Shen M., Singhal A., Est P. van der, Sevink G.J., Boyle A.L. & Kros A. (2021), Liposome fusion with orthogonal coiled coil peptides as fusogens: the efficacy of roleplaying peptides, Chemical Science 12(41): 13782-13792.
- Ben Bdira F., Erkelens A.M., Qin L., Volkov A.N., Lippa A.M., Bowring N., Boyle A.L., Ubbink M., Dove S.L. & Dame R.T. (2021), Novel anti-repression mechanism of H-NS proteins by a phage protein, Nucleic Acids Research 49(18): 10770-10784.
- Benne N., Martins Cardoso R., Boyle A.L., Kros A., Jiskoot W., Kuiper J., Bouwstra J., Eck M. van & Slütter B.A. (2020), Complement Receptor Targeted Liposomes Encapsulating the Liver X Receptor Agonist GW3965 Accumulate in and Stabilize Atherosclerotic Plaques, Advanced Healthcare Materials 9(10): 2000043.
- Egorova E.A., Rijt M.M.J. van, Sommerdijk N., Gooris G.S., Bouwstra J.A., Boyle A.L. & Kros A. (2020), One Peptide for Them All: Gold Nanoparticles of Different Sizes Are Stabilized by a Common Peptide Amphiphile, ACS Nano 14(5): 5874-5886.
- Crone N.S.A., Kros A. & Boyle A.L. (2020), Modulation of Coiled-Coil Binding Strength and Fusogenicity through Peptide Stapling, Bioconjugate Chemistry 31(3): 834-843.
- Lopez Mora N.L., Boyle A.L., Kolck B.J. van, Rossen A., Pokorna S., Koukalova A., Sachl R., Hof M. & Kros A. (2020), Controlled Peptide-Mediated Vesicle Fusion Assessed by Simultaneous Dual-Colour Time-Lapsed Fluorescence Microscopy, Scientific Reports 10(1): 3087.
- Rijt M.M.J. van, Ciaffoni A., Ianiro A., Moradi M.A., Boyle A.L., Kros A., Friedrich H., Sommerdijk N.A.J.M. & Patterson J.P. (2019), Designing stable, hierarchical peptide fibers from block co-polypeptide sequences, Chemical Science 10(39): 9001-9008.
- Boyle A.L., Rabe M., Crone N.S.A., Rhys G.G., Soler N., Voskamp P., Pannu N.S. & Kros A. (2019), Selective coordination of three transition metal ions within a coiled-coil peptide scaffold, Chemical Science 10(31): 7456-7465.
- Sharp T.H., Boyle A.L., Diebolder C.A., Kros A., Koster A.J. & Gros P. (2019), Insights into IgM-mediated complement activation based on in situ structures of IgM-C1-C4b, Proceedings of the National Academy of Sciences 116(24): 11900-11905.
- Crone N.S.A., Minnee D., Kros A. & Boyle A.L. (2018), Peptide-Mediated Liposome Fusion: The Effect of Anchor Positioning, International Journal of Molecular Sciences 19(1): 211.
- Koukalová A., Pokorná Š., Boyle A.L., Lopez Mora N.F., Kros A., Hof M. & Šachl R. (2018), Distinct roles of SNARE-mimicking lipopeptides during initial steps of membrane fusion, Nanoscale 2018(10): 19064-19073.
- Daudey G.A., Zope H.R., Voskuhl J., Kros A. & Boyle A.L. (2017), Membrane-Fusogen Distance Is Critical for Efficient Coiled-Coil-Peptide-Mediated Liposome Fusion, Langmuir 33(43): 12443-12452.
- Tu T., Boyle A.L., Friedrich H., Bomans P.H.H., Bussmann J., Sommerdijk N.A.J.M., Jiskoot W. & Kros A. (2016), Mesoporous Silica Nanoparticles with Large Pores for the Encapsulation and Release of Proteins, ACS Applied Materials and Interfaces 8(47): 32211–32219.
- Zheng T., Bulacu M.I., Daudey G.A., Versluis F., Voskuhl J., Martelli G., Raap J., Sevink G.J.A., Kros A. & Boyle A.L. (2016), A non-zipper-like tetrameric coiled coil promotes membrane fusion, RSC Advances 6(10): 7990-7998.
- Rabe M., Aisenbrey C., Pluhackova K., De Wert V., Boyle A.L., Bruggeman D.F., Kirsch S.A., Böckmann R.A., Kros A., Raap J. & Bechinger B. (2016), A Coiled-Coil Peptide Shaping Lipid Bilayers upon Fusion, Biophysical Journal 111(10): 2162-2175.
- Zheng T., Boyle A.L., Marsden H.R., Valdink D., Martelli G., Raap J. & Kros A. (2015), Probing coiled-coil assembly by paramagnetic NMR spectroscopy , Organic and Biomolecular Chemistry 13: 1159-1168.
- Rabe M., Boyle A., Zope H.R., Versluis F. & Kros A. (2015), Determination of oligomeric states of peptide complexes using thermal unfolding curves, Biopolymers 104(2): 65-72.
- Anderson J.L.R., Armstrong C.T., Kodali G., Lichtenstein B.R., Watkins D.W., Mancini J.A., Boyle A.L., Farid T.A., Crump M.P., Moser C.C. & Dutton P.L. (2014), Constructing a man-made c-type cytochrome maquette in vivo: electron transfer, oxygen transport and conversion to a photoactive light harvesting maquette, Chemical Science 5(2): 507-514.
- Thomas Franziska, Boyle Aimee L., Burton Antony J. & Woolfson Derek N. (2013), A Set of de Novo Designed Parallel Heterodimeric Coiled Coils with Quantified Dissociation Constants in the Micromolar to Sub-nanomolar Regime, Journal of the American Chemical Society 135(13): 5161-5166.
- Singh S.K., Boyle A.L. & Main E.R.G. (2013), LcrH, a Class II Chaperone from the Type Three Secretion System, Has a Highly Flexible Native Structure, Journal of Biological Chemistry 288(6): 4048-4055.
- Fletcher Jordan M., Harniman Robert L., Barnes Frederick R.H., Boyle Aimee L., Collins Andrew, Mantell Judith, Sharp Thomas H., Antognozzi Massimo, Booth Paula J., Linden Noah, Miles Mervyn J., Sessions Richard B., Verkade Paul & Woolfson Derek N. (2013), Self-Assembling Cages from Coiled-Coil Peptide Modules, Science 340(6132): 595-599.
- Boyle A.L., Bromley E.H.C., Bartlett G.J., Sessions R.B., Sharp T.H., Williams C.L., Curmi P.M.G., Forde N.R., Linke H. & Woolfson D.N. (2012), Squaring the Circle in Peptide Assembly: From Fibers to Discrete Nanostructures by de Novo Design, Journal of the American Chemical Society 134(37): 15457-15467.
- Fletcher J.M., Boyle A.L., Bruning M., Bartlett G.J., Vincent T.L., Zaccai N.R., Armstrong C.T., Bromley E.H.C., Booth P.J., Brady R.L., Thomson A.R. & Woolfson D.N. (2012), A Basis Set of de Novo Coiled-Coil Peptide Oligomers for Rational Protein Design and Synthetic Biology, ACS Synthetic Biology 1(6): 240-250.
- Boyle A.L. & Woolfson D.N. (2011), De novo designed peptides for biological applications, Chemical Society Reviews 40(8): 4295-4306.
- Zaccai N.R., Chi B., Thomson A.R., Boyle A.L., Bartlett G.J., Bruning M., Linden N., Sessions R.B., Booth P.J., Brady R.L. & Woolfson D.N. (2011), A de novo peptide hexamer with a mutable channel, Nature Chemical Biology 7(12): 935-941.
- Yoshizumi A., Fletcher J.M., Yu Z., Persikov A.V., Bartlett G.J., Boyle A.L., Vincent T.L., Woolfson D.N. & Brodsky B. (2011), Designed Coiled Coils Promote Folding of a Recombinant Bacterial Collagen, Journal of Biological Chemistry 286(20): 17512-17520.
- Berezovskaya Y., Armstrong C.T., Boyle A.L., Porrini M., Woolfson D.N. & Barran P.E. (2011), Metal binding to a zinc-finger peptide: a comparison between solution and the gas phase, Chemical Communications 47(1): 412-414.
- Armstrong C.T., Boyle A.L., Bromley E.H.C., Mahmoud Z.N., Smith L., Thomson A.R. & Woolfson D.N. (2009), Rational design of peptide-based building blocks for nanoscience and synthetic biology, Faraday Discussions 143: 305-317.
- Fan R., Boyle A.L., Cheong V.V., Ng See Liang & Orner B.P. (2009), A Helix Swapping Study of Two Protein Cages, Biochemistry 48(24): 5623-5630.
- Pugh D., Boyle A.L. & Danopoulos A.A. (2008), 'Pincer' pyridine dicarbene complexes of nickel and their derivatives. Unusual ring opening of a coordinated imidazol-2-ylidene, Dalton Transactions 0(8): 1087-1094.