Krijn Trimbos
Assistant professor
- Name
- Dr. K.B. Trimbos
- Telephone
- +31 71 527 7457
- trimbos@cml.leidenuniv.nl
- ORCID iD
- 0000-0001-5280-6434

Krijn Trimbos is an environmental biologist and molecular ecologist driven by improving biodiversity assessments through the application of novel molecular tools, to ultimately create a better understanding of how humans impact the environment. He is currently head of the department of Environmental Biology within the Institute of Environmental Sciences of Leiden University.
More information about Krijn Trimbos
News
PhD candidates
Professional experience
Krijn graduated in 2007 from Leiden University with a doctorate in Biology. His studies pushed him towards two specialization trajectories, one focused on Medical Biology and one on Environmental Science. He conducted two internships within the field of Medical Biology revolving around immunological B and T-cell responses against Human Papilloma Virus both in The Netherlands and in Indonesia (Bali). During his last internship he worked on breeding success differences of Skylarks between organic and conventional arable farms.
He started a PhD in 2007 at The Institute of Environmental Science (CML) Leiden University. His PhD topic combined the best of both study directions, lab and ecological field work within an Environmental Science scope, and focused on genetic patterns of Black-tailed Godwit populations and their implications for conservation. The aim was to investigate long term population dynamic processes in Black-tailed Godwit populations resulting from habitat fragmentation on three different spatial scales by using genetic tools. He demonstrated that egg shell membranes provide a good alternative DNA source compared to blood for these kind of studies. Additionally, he showed that habitat fragmentation, although geographically visible, has not yet lead to genetic differences between Dutch breeding populations yet. On a global scale three genetically distinct groups were recognized as subspecies, but again within these subspecies populations clear fragmentation affects could not be detected. Finally, he identified fitness correlates within Dutch Godwit breeding populations demonstrating that certain mutations in chicks lead to a higher body mass and return rate. Research entailed close collaboration with the Animal Ecology group of Theunis Piersma, University of Groningen and running three field seasons in South-West Friesland as a part of the long term demographic research that was conducted there by that group.
After 2011 he continued his career at one of the Dutch provincial NGO’s (Landschap Noord-Holland) where he was project leader meadow bird protection for three years, which involved coordination, training and education of volunteer meadow bird protectors and writing and executing research projects involving meadow bird conservation.
In 2014 Krijn returned to the academic world as University Lecturer at the Institute of Environmental Science (CML) where he got involved as a teacher and course coordinator in different teaching programs (Institute of Biology, Leiden University College and at CML) at Leiden University spanning multiple different courses and disciplines; field, sustainability, environmental science courses both on a BSc and MSc level. Since 2017 he has been appointed as Assistant Professor at Institute of Environmental Sciences during which he setup a successful and expanding research line in Environmental DNA (eDNA). Since 2022 he became head of the department of Environmental Biology within the Institute of Environmental Sciences of Leiden University.
Research topic
In his current research Krijn aims to improve biodiversity assessments through the application of novel molecular tools. Where his work originally focused more on increasing our understanding on population dynamic processes of single species through the usage of genetic techniques, his research has moved towards two slightly different focal points:
- Expanding the eDNA toolbox so that it can have a broader use in ecological and environmental science related questions.
- Applying these eDNA tools to ultimately get a better understanding into ecological changes underlying human impacts on the environment.
In recent years his research in regards to focal point 1 has focused on abundance/eDNA concentration correlations for exoskeleton shedding invertebrates and bivalves, seed abundances in mouse feces through eDNA analysis to improve risk assessment methods, eDNA methylation and deriving age classes thereof, understanding detection probability of difficult to detect aquatic species and decreasing false positive estimates of species presence. His recent eDNA application studies have concentrated on the impacts of agricultural stressors & invasive species on aquatic communities. Additionally, he has studied the diet of African lions and how that might relate to National Park management. By collaborating closely with societal partners such as Waterboards, Chemical companies, Universities (of applied science), Naturalis Biodiversity Center, NGO’s, KWS, governments and many others Krijn intents to ensure high societal impact with his research. His future research will focus on studying plant pollinator networks using eDNA and the impact of additional agricultural and other stressors on soil and aquatic communities.
Assistant professor
- Science
- Centrum voor Milieuwetenschappen Leiden
- CML/Environmental Biology
- Plas M. van der, Trimbos K.B., Bosker T. & Vijver M.G. (2025), eDNA-based approaches advance ecotoxicology: Insights and best practices from eDNA metabarcoding studies in evaluating stress-induced aquatic (macro-) invertebrate community composition, Ecological Indicators 172: 113269.
- Dercksen J.A., Schrama M.J.J., Beentjes K.K., Bastiaans B.N., Blom R., Roon. A. van, Lindenburg P.W. & Trimbos K.B. (2025), Invasive Crayfish: Drivers or Passengers of Degradation in Freshwater Ecosystems?, Environmental DNA 7: e70062.
- Wang D., Trimbos K.B., Gomes S.I.F., Jacquemyn H. & Merckx V.S.F.T. (2024), Metabarcoding read abundances of orchid mycorrhizal fungi are correlated to copy numbers estimated using ddPCR, New Phytologist 242(4): 1825-1834.
- Schuijt L.M., Smeden J. van, Drimmelen C.K.E. van, Buijse L.L., Wu D., Boerwinkel M-C., Belgers D.J.M., Matser A.M., Roessink I., Heikamp-de Jong I., Beentjes K.K., Trimbos K.B., Smidt H. & Brink P.J. van den (2024), Effects of antidepressant exposure on aquatic communities assessed by a combination of morphological identification, functional measurements, environmental DNA metabarcoding and bioassays, Chemosphere 349: 140706.
- Schuijt L.M., Drimmelen C.K.E. van, Buijse L.L., Smeden J. van, Wu D., Boerwinkel M-C., Belgers D.J.M., Matser A.M., Roessink I., Beentjes K.K., Trimbos K.B., Smidt H. & Brink P.J. van den (2024), Assessing ecological responses to exposure to the antibiotic sulfamethoxazole in freshwater mesocosms, Environmental Pollution 343: 123199.
- Krol L., Langezaal M., Budidarma L., Wassenaar D., Didaskalou E.A., Trimbos K.B., Dellar M.E., Bodegom P.M. van, Geerling G.W. & Schrama M.J.J. (2024), Distribution of Culex pipiens life stages across urban green and grey spaces in Leiden, The Netherlands, Parasites & Vectors 17: 37.
- Blom R., Krol L., Langezaal M., Schrama M.J.J., Trimbos K.B., Wassenaar D. & Koenraadt C.J.M. (2024), Blood-feeding patterns of Culex pipiens biotype pipiens and pipiens/molestus hybrids in relation to avian community composition in urban habitats, Parasites & Vectors 17: 95.
- Marselis S.M., Hannula S.E., Trimbos K.B., Berg M.P., Bodelier P.L.E., Declerck S.A.J., Erisman J.W., Kuramae E.E., Nanu A., Veen G.F., Zelfde M. van 't & Schrama M.J.J. (2024), The use of living labs to advance agro-ecological theory in the transition towards sustainable land use: a tale of two polders, Environmental Impact Assessment Review 108: 107588.
- Zhang S., Spronsen B. van, Fonck M., Logtestijn R.S.P. van, Soudzilovskaia N.A., Trimbos K.B. & Cornelissen J.H.C. (2024), Disentangling how the opportunistic parasitic fungus Armillaria affects the flammability of coarse deadwood in exotic pine plantations, Forest Ecology and Management 571: 122240.
- Groen K., Jacob J., Hein S., Didaskalou E.A., Bodegom P.M. van, Hahne J. & Trimbos K.B. (2023), DNA-based seed intake quantification for enhanced ecological risk assessment of small mammals, Ecotoxicology and Environmental Safety 259: 115036.
- Groen K., Beekenkamp S., Iongh H.H. de, Lesilau F.L., Chege M.M., Narisha L.L., Veldhuis M.P., Bertola L., Bodegom P.M. van & Trimbos K.B. (2023), DNA metabarcoding illuminates the contribution of small and very small prey taxa to the diet of lions, Environmental DNA 5(6): 1321-1331.
- Zhao B., Bodegom P.M. van & Trimbos K.B. (2023), Bacterial abundance and pH associate with eDNA degradation in water from various aquatic ecosystems in a laboratory setting, Frontiers in Environmental Science 11: 1025105.
- Zhao B., Bodegom P.M. van & Trimbos K.B. (2023), Environmental DNA methylation of Lymnaea stagnalis varies with age and is hypermethylated compared to tissue DNA, Molecular Ecology Resources 23(1): 81-91.
- Zhao B., Bodegom P.M. van & Trimbos K.B. (2023), Antibiotic resistance genes in interconnected surface waters as affected by agricultural activities, Biomolecules 13(2): 231.
- Beentjes K.K, Barmentlo S.H., Cieraad E., Schilthuizen M., Hoorn B.B. van der, Speksnijder A.G.C.L & Trimbos K.B. (2022), Environmental DNA metabarcoding reveals comparable responses to agricultural stressors on different trophic levels of a freshwater community, Molecular Ecology 31(5): 1430-1443.
- Cieraad E., Grunsven R.H.A. van, Sman F. van der, Zwart N., Musters C.J.M., Strange E.F., Langevelde F. van & Trimbos K.B. (2022), Lack of local adaptation of feeding and calling behaviours by Yponomeuta cagnagellus moths in response to artificial light at night, Insect Conservation and Diversity 15(4): 445-452.
- Groen K., Trimbos K.B., Blaauw A.I., Bodegom P.M. van, Hahne J., Jacob J. & Hein S. (2022), Establishment of a faecal DNA quantification technique for rare and cryptic diet constituents in small mammals, Molecular Ecology Resources 22(6): 2220-2231.
- Kok D.D., Scherer L., Vries W. de, Trimbos K.B. & Bodegom P.M. van (2022), Relationships of priming effects with organic amendment composition and soil microbial properties, Geoderma 422: 115951.
- Didaskalou E.A., Trimbos K.B. & Stewart K.A. (2022), Environmental DNA quick guide, Current Biology 32(22): R1250-R1252.
- Trimbos K.B., Cieraad E., Schrama M.J.J., Saarloos A.I., Musters C.J.M., Bertola L.D. & Bodegom P.M. van (2021), Stirring up the relationship between quantified environmental DNA concentrations and exoskeleton‐shedding invertebrate densities, Environmental DNA 3(3): 605-618.
- Zhao B., Bodegom P.M. van & Trimbos K.B. (2021), The particle size distribution of environmental DNA varies with species and degradation, Science of the Total Environment 797: 149175.
- Bosker T., Cieraad E. & Trimbos K.B. (2020), Biodiversity: what are the impacts of food production on biodiversity?. In: Behrens P., Bosker T. & Ehrhardt D. (Eds.), Food and sustainability. Oxford: Oxford University Press. 17.
- Makiola A., Compson Z.G., Baird D.J., Barnes M.A., Boerlijst S.P., Bouchez A., Brennan G., Bush A., Canard E., Cordier T., Creer S., Curry R.A., David P., Dumbrell A.J., Gravel D., Hajibabaei M., Hayden B., Hoorn B. van der, Jarne P., Jones J.I., Karimi B., Keck F., Kelly M., Knot I.E., Krol L., Massol F., Monk W.A., Murphy J., Pawlowski J., Poisot T., Porter T.M., Randall K.C., Ransome E., Ravigné V., Raybould A., Robin S., Schrama M.J.J., Schatz B., Tamaddoni-Nezhad A., Trimbos K.B., Vacher C., Vasselon V., Wood S., Woodward G. & Bohan D.A. (2020), Key Questions for Next-Generation Biomonitoring, Frontiers in Environmental Science 7: 197.
- Barceló M., Bodegom P.M. van, Tedersoo L., Haan N. den, Veen G.F., Ostonen I., Trimbos K.B. & Soudzilovskaia N.A. (2020), The abundance of arbuscular mycorrhiza in soils is linked to the total length of roots colonized at ecosystem level, PLoS ONE 15(9): e0237256.
- Krol L., Hoorn B. van der, Gorsich E.E., Trimbos K.B., Bodegom P.M. van & Schrama M.J.J. (2019), How Does eDNA Compare to Traditional Trapping? Detecting Mosquito Communities in South-African Freshwater Ponds, Frontiers in Ecology and Evolution 7: 260.
- Boerlijst S.P., Trimbos K.B., Beek J.G. van der, Dijkstra K.D.B., Hoorn B.B. van der & Schrama M.J.J. (2019), Field evaluation of DNA based biodiversity monitoring of caribbean mosquitoes, Frontiers in Ecology and Evolution 7: 240.
- Trimbos K.B., Doorenweerd C., Kraaijeveld K., Musters C.J.M., Groen N.M., Kniff P. de, Piersma T. & Snoo G.R. de (2014), Patterns in Nuclear and Mitochondrial DNA Reveal Historical and Recent Isolation in the Black-Tailed Godwit (Limosa limosa), PLoS ONE 9(1): e83949.
- Kentie R., Hooijmeijer J.C.E.W., Trimbos K.B., Groen N.M. & Piersma T. (2013), Intensified agricultural use of grasslands reduces growth and survival of precocial shorebird chicks, Journal of Applied Ecology 50(1): 243-251.
- Trimbos K.B., Kentie R., Velde M van der, Hooijmeijer J.C.E.W., Poley C., Musters C.J.M., Snoo G.R. de & Piersma T. (2013), Intronic variation on the CHD1-Z gene in Black-tailed Godwits Limosa limosa limosa: correlations with fitness components revisited, Ibis 155(3): 508-517.
- Trimbos K.B. (5 November 2013), Genetic patterns of Black-tailed Godwit populations and their implications for conservation (Dissertatie. Institute of Environmental Sciences, Faculty of Science, Leiden University). Supervisor(s) and Co-supervisor(s): Snoo G.R. de & Piersma T., Musters C.J.M.
- Velde M. van der, Galama Y., Hooijmeijer J., Trimbos K. & Piersma T. (2011), Forensische DNA-methoden in het boerenland: Was het misvormde ei van zendergrutto Heidenskip?, Limosa 84(4): 155-161.
- Trimbos K.B., Musters C.J.M., Verkuil Y.I., Kentie R., Piersma T. & Snoo G.R. de (2011), No evident spatial genetic structuring in the rapidly declining Black-tailed Godwit Limosa limosalimosa in The Netherlands, Conservation Genetics 12(3): 629-636.
- Verkuil Y.I., Trimbos K.B., Haddrath O. & Baker A.J. (2009), Characterization of polymorphic microsatellite DNA markers in the black-tailed godwit (Limosa limosa: Aves), Molecular Ecology Resources 9(5): 1415-1418.
- Trimbos K.B., Broekman J., Kentie R., Musters C.J.M. & Snoo G.R. de (2009), Using eggshell membranes as a DNA source for population genetic research, Journal of Ornithology 150(4): 915-920.
- Kragten S., Trimbos K.B. & Snoo G.R. de (2008), Breeding skylarks (Alauda arvensis) on organic and conventional arable farms in The Netherlands, Agriculture, Ecosystems and Environment 126: 163-167.
- Amateurfotograaf