Jeroen Codee
Professor Organic chemistry
- Name
- Prof.dr. J.D.C. Codee
- Telephone
- +31 71 527 5037
- jcodee@chem.leidenuniv.nl
- ORCID iD
- 0000-0003-3531-2138
Carbohydrates, the most diverse and complex class of biomolecules in Nature, are the focus of the research of Jeroen Codée, who aims to unravel their mode of action through the design and synthesis of well-defined glycocojugates as well as inhibitors and probes.
More information about Jeroen Codee
PhD Candidates
News
-
How bittersweet sugar chemistry targets pathogens -
Flu stops when you block the enzyme that cleaves off virus particles -
Madouc Bergers made her own enzyme inhibitors for her bachelor’s thesis -
A synthetic vaccine against meningococcus -
Three new professors for the Leiden Institute of Chemistry -
Sugarcoating the search for a new vaccine -
European collaboration shines a light on enzyme discovery for industry -
Vici grant for Jeroen Codée: ‘I want to understand how sugars are formed’ -
Seven Leiden researchers win €1.5m Vici grant -
Jeroen Codee wins the Carbohydrate Research Award 2017 -
Four ERC grants for Leiden researchers -
Two NWO ECHO grants for Leiden Chemistry -
Anthe Janssen receives Unilever Research Prize 2014 -
Success for Leiden with Vidi subsidies
Teaching
Curriculum Vitae
Personal information
Nationality: Dutch
Date of birth: 30 July 1975
Education
2004 PhD, Leiden Institute of Chemistry, Leiden University, The Netherlands, 29 September 2004. Thesis title: “Chemical Synthesis of Oligosaccharides - A focus on thioglycosides and glycosaminoglycans”
Advisors: Prof. Dr. J.H. van Boom and Prof. Dr. C.A.A. van Boeckel
1999 MSc in Chemistry, Faculty of Chemistry, Leiden University, The Netherlands
Current and previous research positions
2020 - now Full Professor of Organic Chemistry, Leiden Institute of Chemistry, Leiden University, The Netherlands
2009 – 2020 Assistant Professor, Leiden Institute of Chemistry, Leiden University, The Netherlands
2007 – 2009 Post-doctoral Researcher (Veni), Leiden University, Leiden, The Netherlands, (Prof. G.A. van der Marel)
2004 – 2006 Post-doctoral Researcher (TALENT stipend), Eidgenossische Technische Hochschule (ETH) Zürich, Switzerland (Prof. P.H. Seeberger)
Grants, awards, recognitions since 2010
2023 Emil Fischer Award
2023 NWO Snellius Supercomputer time (main applicant, 11.206.400 SBU)
2021 NWO Cartesius Supercomputer time (main applicant, 6.600.000 SBU)
2020 ICI “Amsterdam-Leiden-Nijmegen vaccine consortium: synthetic peptide conjugates for cancer therapy” (co-applicant, k€ 750)
2020 NWO Cartesius Supercomputer time (main applicant, 3.695.650 SBU)
2019 Marie Curie ITN “PAVax” (coordinator, k€ 1.054)
2019 NWO VICI “Dissecting glycosylation reaction mechanisms” (main applicant, k€ 1.500)
2018 NWO TOP “ENDOGLYCOPROBE” (co-applicant with H. Overkleeft and H. Aerts, k€ 780)
2018 NWO LISA Supercomputer time (main applicant, 2.150.550 SBU)
2017 Carbohydrate Research Award for Creativity in Carbohydrate Chemistry
2016 ERC Consolidator grant (k€ 2,000)
2015 NWO-CW ECHO grant (k€ 260)
2015 EU Marie Curie ITN Grant “GLYCOVAX” (k€ 468)
2014 EU Marie Curie ITN Grant “IMMUNOSHAPE” (k€ 218)
2013 NWO KIEM (k€ 19)
2012 NWO-CW Middelgroot grant with Prof. van der Marel (k€ 129)
2011 NWO-CW ECHO grant with Prof. van der Marel (k€ 260)
Contribution to teaching and supervision
- Course ‘Biomolecular Chemistry’ for BSc Molecular Science and Technology (Leiden/Delft)
- Courses ‘Reactivity on Organic Chemistry’, and ‘Molecules of Life’ for MSc Chemistry (Leiden)
Current supervision of 13 PhD students. PhD supervisor of 39 PhD theses (2 cum laude and awarded with the Backer Prize for best Organic Chemistry Thesis in the Netherlands) and 26 PDs since 2011.
Other responsibilities since 2016
- Organizer Glycoscience NL, 2023, Utrecht, NL
- Editor European Journal of Organic Chemistry, 2022 “Carbohydrate Chemistry”
- Editor of Drug Discovery Today: Technologies, Vol 35-36, 2020 “Translating basic research into novel vaccines”
- Organizer Eurocarb XX, 2019, Leiden, NL
- Editor of Carbohydrate Chemistry: Proven Synthetic Methods – Volume 2
- Chairman of the exam committee of the BSc curriculum MST (Leiden/Delft)
- Member of review panel for the Netherlands Organisation for Scientific Research (NWO, Vici panels 2022, 2023)
- Member of the education committee of the BSc programme MST (Leiden/Delft, 2015-2016)
- Member of the Leiden Institute of Chemistry Council (2013-)
- External member to PhD committees in Australia, Canada, Denmark, Ireland, Belgium, Letland, Sweden, Netherlands
- Reviewer for all major (organic) chemistry journals: Nature Chemistry, Nature Communications, Angewandte Chemie, Journal of the American Chemical Society, Chemical Science, Chemistry – A European Journal
Publication record including five recent representative publications
224 papers and book chapters with 6396 citations, H-index 41 (Web of Science)
Full publication record: Leiden University
- Z. Wang, A. Poveda, Q. Zhang, L. Unione, H. S. Overkleeft, G. A. van der Marel, J. Jiménez-Barbero, J. D. C. Codée, Total synthesis and structural studies of zwitterionic Bacteroides fragilis polysaccharide A1 fragments J. Am. Chem. Soc. 2023, 145, 14052-14063. DOI: 10.1021/jacs.3c03976
- S. Ishizuka, J. H. M. van Dijk, T. Kawakita, Y. Miyamoto, Y. Maeda, M. Goto, G. Le Calvez, L. M. Groot, M. D. Witte, A. J. Minnaard, G. A. van der Marel, M. Ato, M. Nagae, J. D. C. Codée, S. Yamasaki, PGL-III, a rare intermediate of Mycobacterium leprae phenolic glycolipid biosynthesis, is a potent Mincle ligand ACS Centr. Sci. 2023, 9, 1388-1399. DOI: 10.1021/acscentsci.3c00040
- J. M.A. van Hengst, R. J.C. Hellemons, W. A. Remmerswaal, K. N. A. van de Vrande, T. Hansen, S. van der Vorm, H. S. Overkleeft, G. A. van der Marel, J. D. C. Codée, Mapping the effect of configuration and protecting group pattern on glycosyl acceptor reactivity Chem. Sci. 2023, 14, 1532-1542. DOI: 10.1039/D2SC06139B
- C. Di Carluccio, P. Soriano Maldonado, F. Berni, C. J. C. de Haas, A. R. Temming, A. Hendriks, S. Ali, A. Molinaro, A. Silipo, N. M. van Sorge, M. J. van Raaij, J. D. C. Codée, R. Marchetti, Antibody recognition of different Staphylococcus aureus wall teichoic acid glycoforms. ACS Centr. Sci. 2022, 8, 1383-1392. DOI: 10.1021/acscentsci.2c00125
- N. R. M. Reintjens, E. Tondini, A. R. de Jong, N. J. Meeuwenoord, F. Chiodo, E. Peterse, H. S. Overkleeft, D. V. Filippov, G. A. van der Marel, F. A. Ossendorp, J. D. C. Codée, Self-adjuvanting cancer vaccines from conjugation-ready lipid A analogues and synthetic long peptides J. Med. Chem. 2020, 63, 11691-11706. DOI: 10.1021/acs.jmedchem.0c00851
Presentations including five presentations at international conferences since 2016
>60 invited presentations at universities and institutes, and invited, and keynote lectures at international conferences since 2012
- Eurocarb XXI, 9-13 July 2023, Paris, France, plenary lecture
- RSC Carbohydrate Group Autumn Meeting, 22-23 November 2022, Belfast, UK, plenary lecture
- Pacifichem, 18 December 2022, Hawaii, USA, invited lecture
- French GlycoSciences Group Conference, 21-25 May 2018, plenary lecture
- European Carbohydrate Symposium, 2-6 July 2017, Barcelona, Spain, plenary lecture
Professor Organic chemistry
- Science
- Leiden Institute of Chemistry
- LIC/Chemical Biology
- LIC/CB/Bio-organic Synthesis
- Minnee H., Rack J.G.M., Marel G.A. van der, Overkleeft H.S., Codée J.D.C., Ahel I. & Filippov D.V. (2024), Solid-phase synthesis and biological evaluation of peptides ADP-Ribosylated at histidine, Angewandte Chemie (International Edition) 63(4): e202313317.
- Remmerswaal W.A., Elferink H., Houthuijs K.J., Hansen T., Braak F. ter, Berden G., Vorm S. van der, Martens J., Oomens J., Marel G.A. van der, Boltje T.J. & Codee J.D.C. (2024), Anomeric triflates versus dioxanium ions: different product-forming intermediates from 3-Acyl benzylidene mannosyl and glucosyl donors, Journal of Organic Chemistry (JOC) 89(3): 1618-1625.
- Dam D., Lagerweij N.R., Janmaat K.M., Kok K., Bouwman E. & Codee J.D.C. (2024), Organic dye-sensitized nitrene generation: intermolecular aziridination of unactivated alkenes, Journal of Organic Chemistry (JOC) 89(5): 3251-3258.
- Ruijgrok G., Wu D., Overkleeft H.S. & Codee J.D.C. (2024), Synthesis and application of bacterial exopolysaccharides, Current Opinion in Chemical Biology 78: 102418.
- Guo J., Balić P., Borodkin V.S., Filippov D.V. & Codee J.D.C. (2024), Synthesis of unsymmetrical difluoromethylene bisphosphonates, Organic Letters 26(3): 739-744.
- Remmerswaal W.A., Hoogers D., Hoopman M.J., Marel G.A. van der & Codee J.D.C. (2024), The influence of acceptor acidity on hydrogen bond mediated aglycone delivery (HAD) through the picoloyl protecting group, European Journal of Organic Chemistry 27(7): e202301063.
- Remmerswaal W.A., Jong T. de, Vrande K.N.A. van de, Louwersheimer R., Verwaal T., Filippov D.V., Codee J.D.C. & Hansen T. (2024), Backside versus frontside SN2 reactions of alkyl triflates and alcohols, Chemistry: a European Journal 30(25): e202400590.
- Ofman T.P., Heming J.J.A., Nin-Hill A., Küllmer F., Moran E., Bennett M., Steneker R., Klein A.M., Ruijgrok G., Kok K., Armstrong Z.W.B., Aerts J.M.F.G., Marel G.A. van der, Rovira C., Davies G.J., Artola M.E., Codée J.D.C. & Overkleeft H.S. Rovira Carme Davies Gideon J. Artola Marta Codée Jeroen D. C. Overkleeft Herman S. (2024), Conformational and electronic variations in 1,2‐ and 1,5a‐Cyclophellitols and their impact on retaining α‐glucosidase inhibition, Chemistry: a European Journal 30(31): e202400723.
- Li Z., Pickles I.B., Sharma M., Melling B., Pallasdies L., Codee J.D.C., Williams S.J., Overkleeft H.S. & Davies G.J. (2024), Detection of sulfoquinovosidase activity in cell lysates using activity-based probes, Angewandte Chemie (International Edition) 63(26): e202401358.
- Artola Perez de Azanza M.E., Aerts J.M.F.G., Marel G.A. van der, Rovira C., Codee J.D.C., Davies G.J. & Overkleeft H.S. (2024), From mechanism-based retaining glycosidase inhibitors to activity-based glycosidase profiling, Journal of the American Chemical Society 146(36): 24729-24741.
- Kohout C.V., Del Bino L., Petrosilli L., D'Orazio G., Romano M.R., Codee J.D.C., Adamo R. & Lay L. (2024), Semisynthetic glycoconjugates as potential vaccine candidates against haemophilus influenzae type a, Chemistry: a European Journal 30(47): e202401695.
- Koemans T.S., Bennett M., Guimaraes Da Lomba Ferraz M.J., Armstrong Z.W.B., Artola Perez de Azanza M.E., Aerts J.M.F.G., Codee J.D.C., Overkleeft H.S. & Davies G.J. (2024), Structure-guided design of C3-branched swainsonine as potent and selective human Golgi α-mannosidase (GMII) inhibitor, Chemical Communications : .
- Rijpkema K.J., Schuller M., Van der veer M.S., Rieken S., Chang D.L.R., Balic P., Todorov A., Minnee H., Wijngaarden S., Matos I.A., Hoch N.C., Codee J.D.C., Ahel I. & Filippov D.V. (2024), Synthesis of structural ADP-ribose analogues as inhibitors for SARS-CoV-2 macrodomain 1, Organic Letters 26(27): 5700-5704.
- Sagmeister T., Gubensäk N., Buhlheller C., Grininger C., Eder M., Dordic A., Millán C., Medina A., Murcia P.A.S., Berni F., Hynönen U., Vejzovic D., Damisch E., Kulminskaya N., Petrowitsch L., Oberere M., Palva A., Malanovic N., Codee J.D.C., Keller W., Usón I. & Pavkov-Keller T. (2024), The molecular architecture of Lactobacillus S-layer: assembly and attachment to teichoic acids, Proceedings of the National Academy of Sciences 121(24): e2401686121.
- Ofman T.P., Marel G.A. van der, Codée J.D.C. & Overkleeft H.S. (2023), Design and synthesis of exocyclic cyclitol aziridines as potential mechanism-based glycosidase inactivators, European Journal of Organic Chemistry 26(16): e202300186.
- Minnee H., Chung H.W., Rack J.G.M., Marel G.A. van der, Overkleeft H.S., Codee J.D.C., Ahel I. & Filippov D.V. (2023), Four of a kind: a complete collection of ADP-ribosylated histidine isosteres using Cu(I)- and Ru(II)-catalyzed click chemistry, Journal of Organic Chemistry (JOC) 88(15): 10801-10809.
- Kuo C.L., Su Q., Nieuwendijk A.M.C.H. van den, Beenakker T.J.M., Offen W.A., Willems L.I., Boot R.G., Sarris A.J.C., Rosa Alcalde Marques A.R.A., Codée J.D.C., Marel G.A. van der, Florea B.I., Davies G.J., Overkleeft H.S. & Aerts J.M.F.G. (2023), The development of a broad-spectrum retaining β-exo-galactosidase activity-based probe, Organic and Biomolecular Chemistry 21(38): 7813-7820.
- Wang Z., Poveda A., Zhang Q., Unione L., Overkleeft H.S., Marel G.A. van der, Jesus J.B. & Codee J.D.C. (2023), Total synthesis and structural studies of zwitterionic Bacteroides fragilis polysaccharide A1 fragments, Journal of the American Chemical Society 145(25): 14052-14063.
- Madern J.M., Voorneveld J., Rack J.G.M., Kistemaker H.A.V., Ahel I., Marel G.A. van der, Codee J.D.C. & Filippov D.V. (2023), 4-thioribose analogues of adenosine diphosphate ribose (ADPr) peptides, Organic Letters 25(27): 4980-4984.
- Vrande K.N.A. van de, Filippov D.V. & Codee J.D.C. (2023), Formation of glycosyl trichloroacetamides from trichloroacetimidate donors occurs through an intermolecular aglycon transfer reaction, Organic Letters 25(33): 6128–6132.
- Pitirollo O., Di Benedetto R., Henriques P., Gasperini G., Mancini F., Carducci M., Massai L., Rossi O., Volbeda A.G., Codee J.D.C., Scorza F.B., Moriel D.G., Necchi F., Lay L., Adamo R. & Micoli F. (2023), Elucidating the role of N-acetylglucosamine in Group A Carbohydrate for the development of an effective glycoconjugate vaccine against Group A Streptococcus, Carbohydrate Polymers 311: 120736.
- Hengst J.M.A. van, Hellemons R.J.C., Remmerswaal W.A., Vrande K.N.A. van de, Hansen T., Vorm S. van der, Overkleeft H.S., Marel G.A. van der & Codee J.D.C. (2023), Mapping the effect of configuration and protecting group pattern on glycosyl acceptor reactivity, Chemical Science 14(6): 1532-1542.
- Chun Y., Remmerswaal W.A., Codee J.D.C. & Woerpel K.A. (2023), Neighboring-group participation by C-2 acyloxy groups: influence of the nucleophile and acyl group on the stereochemical outcome of acetal substitution reactions, Chemistry: a European Journal 29(57): e202301894.
- Ishizuka S., Dijk J.H.M. van, Kawakita T., Miyamoto Y., Maeda Y., Goto M., Le Calvez G., Groot L.M., Witte M.D., Minnaard A.J., Marel G.A. van der, Ato M., Nagae M., Codee J.D.C. & Yamasaki S. (2023), PGL-III, a rare intermediate of Mycobacterium leprae phenolic glycolipid biosynthesis, is a potent Mincle ligand, ACS Central Science 9(7): 1388-1399.
- Gelder M.A., Zanden S.Y. van der, Vriends M.B.L., Wagensveld R.A., Marel G.A. van der, Codee J.D.C., Overkleeft H.S., Wander D.P.A. & Neefjes J.J.C. (2023), Re-exploring the anthracycline chemical space for better anti-cancer compounds, Journal of Medicinal Chemistry 66(16): 11390–11398.
- Wan Y.Y., Zhou M.M., Wang L.M., Hu K.X., Liu D.Y., Liu H., Sun J.S., Codee J.D.C. & Zhang Q.J. (2023), Regio- and stereoselective organocatalyzed relay glycosylations to synthesize 2-amino-2-deoxy-1,3-dithioglycosides, Organic Letters 25(20): 3611-3617.
- Chaye M.A.M., Gasan T.A., Ozir-Fazalalikhan A., Scheenstra M.R., Zawistowska-Deniziak A., Hengel O.R.J. van, Gentenaar M., Manurung M.D., Harvey M.R., Codee J.D.C., Chiodo F., Heijke A.M., Kalinowska A., Diepen A. van, Hensbergen P.J., Yazdanbakhsh M., Guigas B., Hokke C.H. & Smits H.H. (2023), Schistosoma mansoni egg-derived thioredoxin and Sm14 drive the development of IL-10 producing regulatory B cells, PLoS Neglected Tropical Diseases 17(6): e0011344.
- Sorieul C.E.J., Dolce M., Romano M.R., Codée J.D.C. & Adamo R. (2023), Glycoconjugate vaccines against antimicrobial resistant pathogens, Expert Review of Vaccines 22(1): 1055-1078.
- Low K.E., Gheorghita A.A., Tammam S.D., Whitfield G.B., Li Y.E., Riley L.M., Weadge J.T., Caldwell S.J., Chong P.A., Walvoort M.T.C., Kitova E.N., Klassen J.S., Codée J.D.C. & Howell P.L. (2023), Pseudomonas aeruginosa AlgF is a protein-protein interaction mediator required for acetylation of the alginate exopolysaccharide, The Journal of Biological Chemistry 299(11): 105314.
- Males A., Kok K., Nin-Hill A., Koster N. de, Beukel S. van den, Beenakker T.J.M., Marel G.A. van der, Codée J.D.C., Aerts J.M.F.G., Overkleeft H.S., Rovira C., Davies G. & Artola Perez de Azanza M.E. (2023), Trans-cyclosulfamidate mannose-configured cyclitol allows isoform-dependent inhibition of GH47 α-d-mannosidases through a bump–hole strategy, Chemical Science 14(46): 13581-13586.
- McGregor N.G.S., Boer C. de, Foucart Q.P.O., Beenakker T., Offen W.A.., Codee J.D.C., Willems L.I., Overkleeft H.S. & Davies G.J. (2023), A multiplexing activity-based protein-profiling platform for dissection of a native bacterial xyloglucan-degrading system, ACS Central Science 9(12): 2306-2314.
- McCabe S., Bjanes E., Hendriks A., Wang Z., Sorge N.M. van, Pill-Pepe L., Bautista L., Chu E., Codee J.D.C., Fairman J., Kapoor N., Uchiyama S. & Nizet V. (2023), The group A streptococcal vaccine candidate VAX-A1 protects against group B Streptococcusinfection via cross-reactive IgG targeting virulence factor C5a peptidase, Vaccines 11(12): 1811.
- Guo Y., Du X., Krusche J., Beck C., Ali S., Walter A., Winstel V., Mayer C., Codee J.D.C., Peschel A. & Stehle T. (2023), Invasive Staphylococcus epidermidis uses a unique processive wall teichoic acid glycosyltransferase to evade immune recognition, Science Advances 9(47): eadj2641.
- Wang Z., Gimeno A., Lete M.G., Overkleeft H.S., Marel G.A., Chiodo F., Jiménez-Barbero J. & Codée J.D.C. (2023), Synthetic zwitterionic streptococcus pneumoniae Type 1 oligosaccharides carrying labile O-acetyl esters, Angewandte Chemie (International Edition) 62(1): e202211940.
- Borlandelli V., Armstrong Z., Nin-Hill A., Codée J., Raich L., Artola M., Rovira C., Davies G. & Overkleeft H.S. (2023), 4-O-substituted glucuronic cyclophellitols are selective mechanism-based heparanase inhibitors, ChemMedChem 18(4): e202200580.
- Remmerswaal W.A., Hansen T., Hamlin T. & Codée J.D.C. (2023), Origin of stereoselectivity in SE2' reactions of six-membered ring oxocarbenium ions, Chemistry: a European Journal 29(14): e202203490.
- McGregor N.G.S., Kuo C.L., Beenakker T.J.M., Wong C.S., Offen W.A., Armstrong Z.W.B., Florea B.I., Codee J.D.C., Overkleeft H.S., Aerts J.M.F.G. & Davies G.J. (2022), Synthesis of broad-specificity activity-based probes for exo-beta-mannosidases, Organic and Biomolecular Chemistry 20(4): 877-886.
- Xiao K., Hu Y.X., Wan Y.Y., Li X.X., Nie Q., Yan H., Wang L., Liao J.X., Liu D.Y., Tu Y.H., Sun J.S., Codee J.D.C. & Zhang Q.J. (2022), Hydrogen bond activated glycosylation under mild conditions, Chemical Science 13(6): 1600-1607.
- Kok K., Kuo C.L., Katzy R.E., Lelieveld L.T., Wu L., Roig-Zamboni V., Marel G.A. van der, Codee J.D.C., Sulzenbacher G., Davies G.J., Overkleeft H.S., Aerts J.M.F.G. & Artola Perez de Azanza M.E. (2022), 1,6-epi-Cyclophellitol cyclosulfamidate is a bona fide lysosomal α-glucosidase stabilizer for the treatment of Pompe disease, Journal of the American Chemical Society 144(32): 14819-14827.
- Zhang Y., Wang L., Overkleeft H.S., Marel G.A. van der & Codee J.D.C. (2022), Assembly of a library of pel-oligosaccharides featuring α-glucosamine and α-galactosamine linkages, Frontiers in Chemistry 10: 842238.
- Tondini E., Reintjens N.R.M., Castello G., Arakelian T., Isendoorn M.M.E., Camps M., Vree J., Marel G.A. van der, Filippov D.V., Codee J.D.C. & Ossendorp F. (2022), Lipid A analog CRX-527 conjugated to synthetic peptides enhances vaccination efficacy and tumor control, npj Vaccines 7: 64.
- Boer C. de, Armstrong Z.W.B, Lit V.A.J., Barash U., Ruijgrok G., Boyango I., Weitzenberg M.M., Schröder S.P., Sarris A.J.C., Meeuwenoord N.J., Bule P., Kayal Y., Ilan N., Codee J.D.C., Vlodavsky I., Overkleeft H.S., Davies G.J. & Wu L. (2022), Mechanism-based heparanase inhibitors reduce cancer metastasis in vivo, Proceedings of the National Academy of Sciences 119(31): e2203167119.
- Minnee H., Rack J.G.M., Marel G.A. van der, Overkleeft H.S., Codee J.D.C., Ahel I. & Filippov D.V. (2022), Mimetics of ADP-ribosylated histidine through copper(I)-catalyzed click chemistry, Organic Letters 24(21): 3776-3780.
- Hansen T., Nin-Hill A., Codée J.D.C., Hamlin T.A. & Rovira C. (2022), Rational tuning of the reactivity of three-membered heterocycle ring-openings via SN2 reactions, Chemistry: a European Journal 28(60): e202201649.
- Remmerswaal W.A., Houthuijs K.J., Ven R. van de, Elferink H., Hansen T., Berden G., Overkleeft H.S., Marel G.A. van der, Rutjes F., Filippov D.V., Boltje T.J., Martens J., Oomens J. & Codee J.D.C. (2022), Stabilization of glucosyl dioxolenium Ions by "dual participation" of the 2,2-dimethyl-2-(ortho-nitrophenyl)acetyl (DMNPA) protection group for 1,2-cis-glucosylation, Journal of Organic Chemistry (JOC) 87(14): 9139-9147.
- Del Bino L., Osterlid K.E., Wu D., Nonne F., Romano M.R., Codée J.D.C. & Adamo R. (2022), Synthetic glycans to improve current glycoconjugate vaccines and fight antimicrobial resistance, Chemical Reviews 122(20): 15672-15716.
- Demkiw K.M., Remmerswaal W.A., Hansen T., Marel G.A. van der, Codee J.D.C. & Woerpel K.A. (2022), Halogen atom participation in guiding the stereochemical outcomes of acetal substitution reactions, Angewandte Chemie 134(42): e202209401.
- Carluccio C. di, Maldonado P.S., Berni F., Haas C.J.C. de, Temming A.R., Hendriks A., Ali S., Molinaro A., Silipo A., Sorge N.M. van, Raaij M.J. van, Codee J.D.C. & Marchetti R. (2022), Antibody recognition of different staphylococcus aureus wall teichoic acid glycoforms, ACS Central Science 8(10): 1383-1392.
- Elferink H., Remmerswaal W.A., Houthuijs K.J., Jansen O., Hansen T., Rijs A.M., Berden G., Martens J., Oomens J., Codée J.D.C. & Boltje T.J. (2022), Competing C‐4 and C‐5‐acyl stabilization of uronic acid glycosyl cations, Chemistry: a European Journal 28(63): e202201724.
- Wang Z., Enotarpi J., Buffi G., Pezzicoli A., Gstöttner C.J., Nicolardi S., Balducci E., Fabbrini M., Romano M.R., Marel G.A. van der, Del Bino L., Adamo R. & Codée J.D.C. (2022), Chemical Synthesis and Immunological Evaluation of Fragments of the Multiantennary Group-Specific Polysaccharide of Group B Streptococcus, JACS Au 2(7): 1724-1735.
- Gheorghita A.A., Li Y.E., Kitova E.N., Bui D.T., Pfoh R., Low K.E., Whitfield G.B., Walvoort M.T.C., Zhang Q., Codée J.D.C., Klassen J.S. & Howell P.L. (2022), Structure of the AlgKX modification and secretion complex required for alginate production and biofilm attachment in Pseudomonas aeruginosa, Nature Communications 13(1): 7631.
- Ende T.C. van den, Heuts J.M.M., Gential G.P.P., Visser M., Graaff M.J. van de, Ho N.I., Jiskoot W., Valentijn A.R.P.M., Meeuwenoord N.J., Overkleeft H.S., Codée J.D.C., Burg S.H. van der, Verdegaal E.M.E., Marel G.A. van der, Ossendorp F. & Filippov D.V. (2021), Simplified monopalmitoyl toll-like receptor 2 ligand mini-UPam for self-adjuvanting neoantigen-based synthetic cancer vaccines, ChemBioChem 22(7): 1215-1222.
- Dijk J.H.M. van, Hooij A. van, Groot L.M., Geboers J., Moretti R., Verhard-Seymonsbergen E., Jong D. de, Marel G.A. van der, Corstjens P.L.A.M., Codée J.D.C. & Geluk A. (2021), Synthetic Phenolic Glycolipids for application in diagnostic tests for leprosy, ChemBioChem 22(8): 1487-1493.
- Chen Y., Armstrong Z., Artola M., Florea B.I., Kuo C.L., Boer C. de, Rasmussen M.S., Abou Hachem M., Marel G.A. van der, Codee J.D.C., Aerts J.M.F.G., Davies G.J. & Overkleeft H.S. (2021), Activity-based protein profiling of retaining alpha-amylases in complex biological samples, Journal of the American Chemical Society 143(5): 2423-2432.
- McGregor N.G.S., Coines J., Borlandelli V.B., Amaki S., Artola M., Nin-Hill A., Linzel D., Yamada C., Arakawa T., Ishiwata A., Ito Y., Marel G.A. van der, Codee J.D.C., Fushinobu S., Overkleeft H.S., Rovira C. & Davies G.J. (2021), Cysteine nucleophiles in glycosidase catalysis: application of a covalent β‐l‐arabinofuranosidase inhibitor, Angewandte Chemie (International Edition) 60(11): 5754-5758.
- Hansen T., Vermeeren P., Yoshisada R., Filippov D.V., Marel G.A. van der, Codee J.D.C. & Hamlin T.A. (2021), How Lewis acids catalyze ring-openings of cyclohexene oxide, Journal of Organic Chemistry (JOC) 86(4): 3565-3573.
- Wan I.C., Hamlin T.A., Eisink N.N.H.M., Marinus N., Boer C. de, Vis C.A., Codee J.D.C., Witte M.D., Minnaard A.J. & Bickelhaupt F.M. (2021), On the origin of regioselectivity in palladium-catalyzed oxidation of glucosides, European Journal of Organic Chemistry 2021(4): 632-636.
- Marneth K., Elst H. van den, Cramer-Blok A.J., Codee J.D.C., Overkleeft H.S., Aerts J.M.F.G., Ubbink M. & Ben Bdira F. (2021), Tuning the transglycosylation reaction of a GH11 xylanase by a delicate enhancement of its thumb flexibility, ChemBioChem 22(10): 1743-1749.
- Hendriks A., Dalen R. van, Ali S., Gerlach D., Marel G.A. van der, Fuchsberger F.F., Aerts P.C., Haas C.J.C. de, Peschel A., Rademacher C., Strijp J.A.G., Codée J.D.C. & Sorge N.M. van (2021), Impact of glycan linkage to staphylococcus aureus wall teichoic acid on langerin recognition and langerhans cell activation, ACS infectious diseases 7(3): 624-635.
- Wander D.P.A., Zanden S.Y. van der, Vriends M.B.L. Veen B.C. van, Vlaming J.G.C., Bruyning T., Hansen T., Marel G.A. van der, Overkleeft H.S., Neefjes J.J.C. & Codée J.D.C. (2021), Synthetic (N,N-dimethyl)doxorubicin glycosyl diastereomers to dissect modes of action of anthracycline anticancer drugs, Journal of Organic Chemistry (JOC) 86(8): 5757-5770.
- Ali S., Hendriks A., Dalen R. van, Bruyning T., Meeuwenoord N., Overkleeft H.S., Filippov D.V., Marel G.A. van der Sorge N.M. van & Codee J.D.C. (2021), (Automated) synthesis of well-defined staphylococcus aureus wall teichoic acid fragments, Chemistry: a European Journal 27(40): 10461-10469.
- Berni F., Wang L., Kalfopoulou E., Nguyen D.L., Es D. van der, Hübner J., Overkleeft H.S., Hokke C.H., Marel G.A. van der, Diepen A. van & Codée J.D.C. (2021), Generation of glucosylated sn-1-glycerolphosphate teichoic acids: glycerol stereochemistry affects synthesis and antibody interaction, RSC Chemical Biology 2(1): 187-191.
- Schroder S.P., Offen W.A., Males A., Jin Y., Boer C. de, Enotarpi J., Marino L., Marel G.A. van der, Florea B.I., Codee J.D.C., Overkleeft H.S. & Davies G.J. (2021), Development of Non-Hydrolysable Oligosaccharide Activity-Based Inactivators for Endoglycanases: A Case Study on alpha-1,6 Mannanases, Chemistry: a European Journal 27(37): 9519-9523.
- Berni F., Kalfopoulou E., Gimeno Cardells A.M., Carboni F., Es D. van der, Romero-Saavedra F., Laverde D., Miklic K., Malic S., Rovis T.L., Jonjic S., Ali S., Overkleeft H.S., Hokke C.H., Diepen A. van, Adamo R., Jiménez-Barbero J., Marel G.A. van der, Huebner J. & Codée J.D.C. (2021), Epitope recognition of a monoclonal antibody raised against a synthetic glycerol phosphate based teichoic acid, ACS Chemical Biology 16(8): 1344-1349.
- Broendum S.S., Williams D.E., Hayes B.K., Kraus F., Fodor J., Clifton B.E., Volbeda A.G., Codee J.D.C., Riley B.T., Drinkwater N., Farrow K.A., Tsyganov K., Heselpoth R.D., Nelson D.C., Jackson C.J., Buckle A.M. & McGowan S. (2021), High avidity drives the interaction between the streptococcal C1 phage endolysin, PlyC, with the cell surface carbohydrates of Group A Streptococcus, Molecular Microbiology 116(2): 397-415.
- Reijneveld J.F., Marino L., Cao T.P., Cheng T.Y., Dam D., Shahine A., Witte M.D., Filippov D.V., Suliman S., Marel G.A. van der, Moody D.B., Minnaard A.J., Rossjohn J., Codee J.D.C. & Rhijn I. van (2021), Rational design of a hydrolysis-resistant mycobacterial phosphoglycolipid antigen presented by CD1c to T cells, Journal of Biological Chemistry 297(4): 101197.
- Harvey M.R., Chiodo F., Noest W., Hokke C.H., Marel G.A. & Codee J.D.C. (2021), Synthesis and antibody binding studies of schistosome-derived oligo-alpha-(1-2)-l-fucosides, Molecules 26(8): 2246.
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- Riera R., Hogervorst T.P., Doelman W., Ni Y., Pujals S., Bolli E., Codee J.D.C., Kasteren S.I. van & Albertazzi L. (2021), Single-molecule imaging of glycan-lectin interactions on cells with Glyco-PAINT, Nature Chemical Biology 17: 1281-1288.
- Ofman T.P., Küllmer F., Marel G.A. van der, Codée J.D.C. & Overkleeft H.S. (2021), An orthogonally protected cyclitol for the construction of nigerose- and dextran-mimetic cyclophellitols, Organic Letters 23(24): 9516-9519.
- Boer C. de, McGregor N.G.S., Peterse E., Schröder S.P., Florea B.I., Jiang J., Reijngoud J., Ram A.F.J., Wezel G.P. van, Marel G.A. van der, Codee J.D.C., Overkleeft H.S. & Davies G.J. (2021), Glycosylated cyclophellitol-derived activity-based probes and inhibitors for cellulases, RSC Chemical Biology 2(6): 1701.
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- Laverde D., Romero-Saavedra F., Argunov D.A., Enotarpi J., Krylov V.B., Kalfopoulou E., Martini C., Torelli R., Marel G.A. van der, Sanguinetti M., Codée J.D.C., Nifantiev N.E. & Huebner J. (2020), Synthetic oligomers mimicking capsular polysaccharide diheteroglycan are potential vaccine candidates against encapsulated Enterococcal infections, ACS infectious diseases 6(7): 1816-1826.
- Geus M.A.R. de, Maurits E., Sarris A.J.C., Hansen T., Kloet M.S., Kamphorst K., Hoeve W. ten, Robillard M.S., Pannwitz A., Bonnet S.A., Codée J.D.C., Filippov D.V., Overkleeft H.S. & Kasteren S.I. van (2020), Fluorogenic Bifunctional Trans-cyclooctenes as Efficient Tools for Investigating Click-to-Release Kinetics, Chemistry: a European Journal 26(44): 9900-9904.
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- Mechelen J. van, Voorneveld J., Overkleeft H.S., Filippov D.V., Marel G.A. van der & Codée J.D.C. (2020), Synthesis of orthogonally protected and functionalized bacillosamines, Organic and Biomolecular Chemistry 18(15): 2834-2837.
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- Ubbink M., Ben Bdira F, Waudby C.A., Volkov A.N., Schröder S.P., Ab E., Codée J.D.C., Overkleeft H.S., Aerts J.M.F.G. & Ingen H. van (2020), Dynamics of ligand binding to a rigid glycosidase, Angewandte Chemie (International Edition) 59(46): 20508-20514.
- Armstrong Z., Kuo C.L., Lahav D., Liu B., Johnson R., Beenakker T.J.M., Boer C. de, Wong C.S., Rijssel E.R. van, Debets M.F., Florea B.I., Hissink C., Boot R.G., Geurink P.P., Ovaa H., Stelt M. van der, Marel G.A. van der, Codée J.D.C., Aerts J.M.F.G., Wu L., Overkleeft H.S. & Davies G.J. (2020), Manno-epi-cyclophellitols enable activity-based protein profiling of human α-mannosidases and discovery of new golgi mannosidase II inhibitors, Journal of the American Chemical Society 142(30): 13021-13029.
- Madern J.M. Kim R.Q. Misra M. Dikic I. Zhang Y. Ovaa H. Codée J.D.C. Filippov D.V. Heden van Noort G.J. van der (2020), Synthesis of Stable NAD+ Mimics as Inhibitors for the Legionella pneumophila Phosphoribosyl Ubiquitylating Enzyme SdeC , ChemBioChem 21(20): 2903-2907.
- Bamford N.C., Mauff F. Le, Loon J.C. van, Ostapska H., Snarr B.D., Zhang Y., Kitova E.N., Klassen J.S., Codee J.D.C., Sheppard D.C. & Howell P.L. (2020), Structural and biochemical characterization of the exopolysaccharide deacetylase Agd3 required for Aspergillus fumigatus biofilm formation, Nature Communications 11: 2450.
- Enotarpi J.Tontini M. Balocchi C. Es D. van der Auberger L. Balducci E. Carboni F. Proietti D. Casini D. Filippov D.V. Overkleeft H.S. Marel G.A. van der Colombo C. Romano M.R. Berti F. Costantino P. Codeé J.D.C. Lay L. Adamo R. (2020), A stabilized glycomimetic conjugate vaccine inducing protective antibodies against Neisseria meningitidis serogroup A, Nature Communications 11: 4434.
- Reintjens N.R.M., Tondini E., Vis C., McGlinn T., Meeuwenoord N.J., Hogervorst T.P., Overkleeft H.S., Filippov D.V., Marel G.A. van der, Ossendorp F.A. & Codée J.D.C. (2020), Multivalent, stabilized mannose-6-phosphates for the targeted delivery of toll-like receptor ligands and peptide antigens, ChemBioChem 22(2): 434-440.
- Hansen T., Ofman T.P., Vlaming J.G.C., Gagarinov I.A., Beek J. van, Goté T.A., Tichem J.M., Ruijgrok G., Overkleeft H.S., Filippov D.V., Marel G.A. van der & Codée J.D.C. (2020), Reactivity-stereoselectivity mapping for the assembly of Mycobacterium marinum lipooligosaccharides, Angewandte Chemie (International Edition) 60(2): 937-945.
- Hansen T., Vermeeren P., Haim A., Dorp M.J.H. van, Codee J.D.C., Bickelhaupt F.M. & Hamlin T.A. (2020), Regioselectivity of Epoxide Ring-Openings via S(N)2 Reactions Under Basic and Acidic Conditions, European Journal of Organic Chemistry 2020(25): 3822-3828.
- Reintjens N.R.M., Koemans T.S., Zilverschoon N., Castelli R., Cordfunke R.A., Drijfhout J.W., Meeuwenoord N.J., Overkleeft H.S., Filippov D.V., Marel G.A. van der & Codée J.D.C. (2020), Synthesis of C-Glycosyl Amino Acid Building Blocks Suitable for the Solid-Phase Synthesis of Multivalent Glycopeptide Mimics, European Journal of Organic Chemistry 2020(32): 5126-5139.
- Li R.J.E., Hogervorst T.P., Achilli S., Bruijns S.C.M., Spiekstra S., Vives C., Thepaut M., Filippov D.V., Marel G.A. van der, Vliet S.J. van, Fieschi F., Codee J.D.C. & Kooyk Y. van (2020), Targeting of the C-Type Lectin Receptor Langerin Using Bifunctional Mannosylated Antigens, Frontiers in Cell and Developmental Biology 8: 556.
- Wander D.P.A., Zanden S.Y. van der, Marel G.A. van der, Overkleeft H.S., Neefjes J.J.C. & Codee J.D.C. (2020), Doxorubicin and aclarubicin: shuffling anthracycline glycans for improved anticancer agents, Journal of Medicinal Chemistry 63(21): 12814-12829.
- Enotarpi J., Tontini M., Balocchi C., Es D. van der, Auberger L.C., Balducci E., Carboni F., Proietti D., Casini D., Filippov D.V., Overkleeft H.S., Marel G.A. van der, Colombo C., Romano M.R., Berti F., Costantino P., Codeé J.D.C., Lay L. & Adamo R. (2020), Publisher correction: a stabilized glycomimetic conjugate vaccine inducing protective antibodies against Neisseria meningitidis serogroup A, Nature Communications 11(1): 6155.
- Reintjens N.R.M., Tondini E., Jong A.R. de, Meeuwenoord N.J., Chiodo F., Peterse E., Overkleeft H.S., Filippov D.V., Marel G.A. van der, Ossendorp F.A. & Codée J.D.C. (2020), Self-adjuvanting cancer vaccines from conjugation-ready lipid A analogues and synthetic long peptides, Journal of Medicinal Chemistry 63(20): 11691-11706.
- Boer C. de, McGregor N.G.S., Peterse E., Schröder S.P., Florea B.I., Jiang J., Reijngoud J., Ram A.F.J., Wezel G.P. van, Marel G.A. van der, Codée J.D.C., Overkleeft H.S. & Davies G.J. (2020), Glycosylated cyclophellitol-derived activity-based probes and inhibitors for cellulases, RSC Chemical Biology 1(3): 148-155.
- Artola M., Kuo C.L., Lelieveld L.T., Rowland R.J., Marel G.A. van der, Codée J.D.C., Boot R.G., Davies G.J., Aerts J.M.F.G. & Overkleeft H.S. (2019), Functionalized cyclophellitols are selective glucocerebrosidase inhibitors and induce a bona fide neuropathic Gaucher model in zebrafish, Journal of the American Chemical Society 141(10): 4214-4218.
- Madern J.M., Hansen T., Rijssel E.R. van, Kistemaker H.A.V., Vorm S. van der, Overkleeft H.S., Marel G.A. van der, Filippov D.V. & Codee J.D.C. (2019), Synthesis, Reactivity, and Stereoselectivity of 4-Thiofuranosides, Journal of Organic Chemistry (JOC) 84(3): 1218-1227.
- Zom G.G., Willems M.M.J.H.P., Meeuwenoord N., Reintjens N.R.M., Tondini E., Khan S., Overkleeft H.S., Marel G.A. van der, Codée J.D.C., Ossendorp F. & Filippov D.V. (2019), Dual Synthetic Peptide Conjugate Vaccine Simultaneously Triggers TLR2 and NOD2 and Activates Human Dendritic Cells, Bioconjugate Chemistry 30(4): 1150-1161.
- Vorm S. van der, Hansen T., Rijssel E.R. van, Dekkers R., Madern J.M., Overkleeft H.S., Filippov D.V., Marel G.A. van der & Codée J.D.C. (2019), Furanosyl oxocarbenium ion Conformational Energy Landscape maps as a tool to study the glycosylation stereoselectivity of 2-azidofuranoses, 2-fluorofuranoses and methyl furanosyl uronates, Chemistry: a European Journal 25(29): 7149-7157.
- Gential G.P.P., Hogervorst T.P., Tondini E., Graaff M.J. van de, Overkleeft H.S., Codée J.D.C., Marel G.A. van der, Ossendorp F. & Filippov D.V. (2019), Peptides conjugated to 2-alkoxy-8-oxo-adenine as potential synthetic vaccines triggering TLR7, Bioorganic and Medicinal Chemistry Letters 29(11): 1340-1344.
- Wang L., Overkleeft H.S., Marel G.A. van der & Codee J.D.C. (2019), Reagent Controlled Stereoselective Assembly of alpha-(1,3)-Glucans, European Journal of Organic Chemistry 2019(10): 1994-2003.
- Hansen T., Lebedel L., Remmerswaal W.A., Vorm S. van der, Wander D.P.A., Somers M., Overkleeft H.S., Filippov D.V., Désiré J., Mingot A., Bleriot Y., Marel G.A. van der, Thibaudeau S. & Codée J.D.C. (2019), Defining the SN1 Side of Glycosylation Reactions: Stereoselectivity of Glycopyranosyl Cations, ACS Central Science 5(5): 781-788.
- Schröder S.P., Boer C. de, McGregor N.G.S., Rowland R.J., Moroz O., Blagova E., Reijngoud J., Arentshorst M., Osborn D., Morant M.D., Abbate E., Stringer M.A., Krogh K.B.R.M., Raich L., Rovira C., Wezel G.P. van, Berrin J.G., Florea B.I., Ram A.F.J., Codée J.D.C., Marel G.A. van der, Wu L., Wilson K.S., Overkleeft H.S. & Davies G.J. (2019), Dynamic and functional profiling of Xylan-degrading enzymes in aspergillus secretomes using activity-based probes, ACS Central Science 5(6): 1067-1078.
- Le Mauff F., Bamford N.C., Alnabelseya N., Zhang Y., Baker P., Robinson H., Codee J.D.C., Howell P.L. & Sheppard D.C. (2019), Molecular mechanisms of Aspergillus fumigatus biofilm disruption by fungal and bacterial glycoside hydrolases, Journal of Biological Chemistry 294(28): 10760-10772.
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- Ham A. van der, Hansen T., Lodder G., Codée J.D.C., Hamlin T.A. & Filippov D.V. (2019), Computational and NMR Studies on the Complexation of Lithium Ion to 8‐Crown‐4, ChemPhysChem 20(16): 2103-2109.
- Zhang Q., Gimeno A., Santana D., Wang Z., Valdés-Balbin Y., Rodríguez-Noda L.M., Hansen T., Kong L., Shen M., Overkleeft H.S., Vérez-Bencomo V., Marel G.A. van der, Jiménez-Barbero J., Chiodo F. & Codée J.D.C. (2019), Synthetic, Zwitterionic Sp1 Oligosaccharides Adopt a Helical Structure Crucial for Antibody Interaction, ACS Central Science 5(8): 1407-1416.
- Dalen R. van, Molendijk M.M., Ali S., Kessel K.P.M. van, Aerts P., Strijp J.A.G. van, Haas C.J.C. de, Codée J.D.C. & Sorge N.M. van (2019), Do not discard Staphylococcus aureus WTA as a vaccine antigen, Nature 572(7767): E1-E2.
- Hendrikse S.I.S., Su L., Hogervorst T.P., Lafleur R.P.M., Lou X., Marel G.A. van der, Codee J.D.C. & Meijer E.W. (2019), Elucidating the Ordering in Self-Assembled Glycocalyx Mimicking Supramolecular Copolymers in Water, Journal of the American Chemical Society 141(35): 13877-13886.
- Bamford N.C., Le Mauff F., Subramanian A.S., Yip P., Millán C., Zhang Y., Zacharias C., Forman A., Nitz M., Codée J.D.C., Usón I., Sheppard D.C. & Howell P.L. (2019), Ega 3 from the fungal pathogen Asperfillus fumigatus is an endo-α-1,4-galactosaminidase that disrupts microbialbiofilms, Journal of Biological Chemistry 294(37): 13833-13849.
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- Artola Perez de Azanza M.E., Wouters S., Schröder S.P., Boer C. de, Chen Y., Petracca R., Nieuwendijk A.M.C.H. van den, Aerts J.M.F.G., Marel G.A. van der, Codée J.D.C. & Overkleeft H.S. (2019), Direct Stereoselective Aziridination of Cyclohexenols with 3-Amino-2-(trifluoromethyl)quinazolin-4(3H)-one in the Synthesis of Cyclitol Aziridine Glycosidase Inhibitors, European Journal of Organic Chemistry 2019(6): 1397-1404.
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- Schröder S.P., Wu L., Artola Perez de Azanza M.E., Hansen T., Offen W.A., Guimaraes da Lomba Ferraz M.J., Li K.-Y., Aerts J.M.F.G., Marel G.A. van der, Codee J.D.C., Davies G.J. & Overkleeft H.S. (2018), Gluco-1H-imidazole: A New Class of Azole-Type beta-Glucosidase Inhibitor, Journal of the American Chemical Society 140(15): 5045-5048.
- Schröder S.P., Kallemeijn W.W., Debets M.F., Hansen T., Sobala L.F., Hakki Z., Williams S.J., Beenakker T.J.M., Aerts J.M.F.G., Marel G.A. van der, Codée J.D.C., Davies G.J. & Overkleeft H.S. (2018), Spiro-epoxyglycosides as activity-based probes for glycoside hydrolase family 99 endomannosidase/endomannanase, Chemistry: a European Journal 24(39): 9983-9992.
- Rooden E.J. van, Kreekel R., Hansen T., Janssen A.P.A., Esbroeck A.C.M. van, Dulk H. den, Berg R.J.B.H.N. van den, Codee J.D.C. & Stelt M. van der (2018), Two-step activity-based protein profiling of diacylglycerol lipase, Organic and Biomolecular Chemistry 16: 5250-5253.
- Wang L., Overkleeft H.S., Marel G.A. van der & Codée J.D.C. (2018), Reagent Controlled Stereoselective assembly of alpha-(1-3)-Glucans, Journal of the American Chemical Society 140(13): 4632–4638.
- Vorm S. van der, Hengst J.M.A. van, Bakker M.H.E., Overkleeft H.S., Marel G.A. van der & Codee J.D.C. (2018), Mapping the Relationship between Glycosyl Acceptor Reactivity and Glycosylation Stereoselectivity, Angewandte Chemie (International Edition) 57(27): 8240-8244.
- Es D. van der, Berni F., Hogendorf W.F.J., Meeuwenoord N., Laverde D., Diepen A. van, Overkleeft H.S., Filippov D.V., Hokke C.H., Huebner J., Marel G.A. van der & Codée J.D.C. (2018), Streamlined Synthesis and Evaluation of Teichoic Acid Fragments, Chemistry: a European Journal 24(16): 4014-4018.
- Beenakker T.J.M., Wander D.P.A., Codée J.D.C., Aerts J.M.F.G., Marel G.A. van der & Overkleeft H.S. (2018), Synthesis of Carba-Cyclophellitols: a New Class of Carbohydrate Mimetics, European Journal of Organic Chemistry 2018(20-21): 2504-2517.
- Sarris A.J.C., Hansen T., Geus M.A.R. de, Maurits E., Doelman W., Overkleeft H.S., Codée J.D.C., Filippov D.V. & Kasteren S.I. van (2018), Fast and pH-Independent Elimination of trans-Cyclooctene by Using Aminoethyl-Functionalized Tetrazines, Chemistry: a European Journal 24(68): 18075-18081.
- Artola M., Kuo C.L., McMahon S.A., Oehler V., Hansen T., Lienden M.J.C. van der, He X., Elst H. van den, Florea B.I., Kermode A.R., Marel G.A. van der, Gloster T.M., Codée J.D.C., Overkleeft H.S. & Aerts J.M.F.G. (2018), New Irreversible alpha-l-Iduronidase Inhibitors and Activity-Based Probes, Chemistry: a European Journal 24(71): 19081-19088.
- Fletcher E.A.K., Maren W. van, Cordfunke R., Dinkelaar J., Codee J.D.C., Marel G.A. van der, Melief C.J.M., Ossendorp F., Drijfhout J.W. & Mangsbo S.M. (2018), Formation of Immune Complexes with a Tetanus-Derived B Cell Epitope Boosts Human T Cell Responses to Covalently Linked Peptides in an Ex Vivo Blood Loop System, Journal of Immunology 201(1): 87-97.
- Gerlach D., Guo Y., De Castro C., Kim S.H., Schlatterer K., Xu F.F., Pereira C., Seeberger P.H., Ali S., Codee J.D.C., Sirisarn W., Schulte B., Wolz C., Larsen J., Molinaro A., Lee B.L., Xia G., Stehle T. & Peschel A. (2018), Methicillin-resistant Staphylococcus aureus alters cell wall glycosylation to evade immunity, Nature 563: 705-709.
- Hagen B., Vorm S. van der, Hansen T., Marel G.A. van der & Codée J.D.C. (2017), Stereoselective glycosylations - Additions to oxocarbenium ions. In: Bennett C. (Ed.), Selective Glycosylations – Synthetic Methods and Catalysts: Wiley.
- Es D. van der, Hogendorf W.F.J., Overkleeft H.S., Marel G.A. van der & Codee J.D.C. (2017), Teichoic Acids: Synthesis and Applications, Chemical Society Reviews 46: 1464-1482.
- Hagen B., Ali S., Overkleeft H.S., Marel G.A. van der & Codee J.D.C. (2017), Mapping the reactivity and selectivity of 2-azidofucosyl donors for the efficient assembly of N-acetyl fucosamine containing bacterial oligosaccharides, Journal of Organic Chemistry (JOC) 82(2): 848–868.
- Vorm S. van der, Hansen T., Overkleeft H.S., Marel G.A. van der & Codee J.D.C. (2017), The Influence of Acceptor Nucleophilicity on the Glycosylation Reaction Mechanism, Chemical Science 2017(8): 1867-1875.
- Nicolardi S., Burgt Y.E.M. van der, Codée J.D.C., Wuhrer M., Hokke C.H. & Chiodo F. (2017), Structural Characterization of Biofunctionalized Gold Nanoparticles by Ultrahigh-Resolution Mass Spectrometry, ACS Nano 11(8): 8257-8264.
- Mirzaian M., Wisse P., Guimaraes da Lomba Ferraz M.J., Marques A.R.A., Gaspar P., Oussoren S.V., Kytidou K., Codée J.D.C., Marel G.A. van der, Overkleeft H.S. & Aerts J.M.F.G. (2017), Simultaneous quantitation of sphingoid bases by UPLC-ESI-MS/MS with identical C-13-encoded internal standards, Clinica Chimica Acta 466: 178-184.
- Rijssel E.R. van, Janssen A.P.A., Males A., Davies G.J., Marel G.A. van der, Overkleeft H.S. & Codee J.D.C. (2017), Conformational behaviour of Azasugars based on mannuronic acid, ChemBioChem 18(13): 1297-1304.
- Artola Perez de Azanza M.E., Wu L., Guimaraes da Lomba Ferraz M.J., Kuo C.L., Raich L., Breen I.Z., Offen W.A., Codee J.D.C., Marel G.A. van der, Rovira C., Aerts J.M.F.G., Davies G.J. & Overkleeft H.S. (2017), 1,6-Cyclophellitol Cyclosulfates: A New Class of Irreversible Glycosidase Inhibitor, ACS Central Science 3(7): 784-793.
- Wu L., Jiang J., Jin Y., Kallemeijn W.W., Kuo C.-L., Artola M., Dai W., Elk C. van, Eijk M. van, Marel G.A. van der, Codee J.D.C., Florea B.I., Aerts J.M.F.G., Overkleeft H.S. & Davies G.J. (2017), Activity-based probes for functional interrogation of retaining beta-glucuronidases, Nature Chemical Biology 13(8): 867-873.
- Beenakker T.J.M., Wander D.P.A., Offen W.A., Artola Perez de Azanza M.E., Raich L., Guimaraes da Lomba Ferraz M.J., Li K.Y., Houben J.H.P.M., Rijssel E.R. van, Hansen T., Marel G.A. van der, Codee J.D.C., Aerts J.M.F.G., Rovira C., Davies G.J. & Overkleeft H.S. (2017), Carba-cyclophellitols Are Neutral Retaining-Glucosidase Inhibitors, Journal of the American Chemical Society 139(19): 6534-6537.
- Jiang J., Kuo C.L., Wu L., Franke C., Kallemeijn W.W., Florea B.I., Meel H.M.M. van, Marel G.A. van der, Codee J.D.C., Boot R.G., Davies G.J., Overkleeft H.S. & Aerts J.M.F.G. (2017), Correction to "Detection of Active Mammalian GH31 α-Glucosidases in Health and Disease Using In-Class, Broad-Spectrum Activity-Based Probes", ACS Central Science 3(6): 673.
- Schröder S.P., Sande J.W. van de, Kallemeijn W.W., Kuo C.L., Artola Perez de Azanza M.E., Rooden E.J. van, Jiang J., Beenakker T.J.M., Florea B.I., Offen W.A., Davies G.J., Minnaard A.J., Aerts J.M.F.G., Codee J.D.C., Marel G.A. van der & Overkleeft H.S. (2017), Towards broad spectrum activity-based glycosidase probes: synthesis and evaluation of deoxygenated cyclophellitol aziridines, Chemical Communications 53(93): 12528-12531.
- Zhang Q., Howell P.L., Overkleeft H.S., Filippov D.V., Marel G.A. van der & Codee J.D.C. (2017), Chemical synthesis of guanosine diphosphate mannuronic acid (GDPManA) and its C-4-O-methyl and C-4-deoxy congeners, Carbohydrate Research 450: 12-18.
- Volbeda A.G., Mechelen J. van, Meeuwenoord N., Overkleeft H.S., Marel G.A. van der & Codee J.D.C. (2017), Cyanopivaloyl Ester in the Automated Solid-Phase Synthesis of Oligorhamnans, Journal of Organic Chemistry (JOC) 82(24): 12992-13002.
- Hagen B., Dijk J.H.M. van, Zhang Q., Overkleeft H.S., Marel G.A. van der & Codee J.D.C. (2017), Synthesis of the Staphylococcus aureus Strain M Capsular Polysaccharide Repeating Unit, Organic Letters 19(10): 2514-2517.
- Zhang Qingju, Overkleeft Herman S., Van der Marel Gijsbert A. & Codee Jeroen D.C. (2017), Synthetic zwitterionic polysaccharides, Current Opinion in Chemical Biology 40: 95-101.
- Vorm S. van der, Overkleeft H.S., Marel G.A. van der & Codee J.D.C. (2017), Stereoselectivity of Conformationally Restricted Glucosazide Donors, Journal of Organic Chemistry (JOC) 82(9): 4793-4811.
- Willems M.M.J.H.P., Zom G.G., Meeuwenoord N.J., Khan S., Ossendorp F.A., Overkleeft H.S., Marel G.A. van der, Filippov D.V. & Codée J.D.C. (2016), Lipophilic muramyl dipeptide-antigen conjugates as immunostimulating agents, ChemMedChem 11(2): 190-198.
- Mirzaian M., Wisse P., Ferraz M.J., Marques A.R., Gabriel T.L., Roomen C.P. van, Ottenhoff R., Eijk M. van, Codée J.D., Marel G.A. van der, Overkleeft H.S. & Aerts J.M. (2016), Accurate quantification of sphingosine-1-phosphate in normal and Fabry disease plasma, cells and tissues by LC-MS/MS with (13)C-encoded natural S1P as internal standard, Clinica Chimica Acta 459: 36-44.
- Jiang J., Artola Perez de Azanza M.E., Beenakker T.J.M., Schröder S.P., Petracca R., Boer C. de, Aerts J.M.F.G., Marel G.A. van der, Codée J.D.C. & Overkleeft H.S. (2016), The synthesis of cyclophellitol-aziridine and its configurational and functional isomers, European Journal of Organic Chemistry 2016(22): 3671-3678.
- Es D. van der, Groenia N.A., Laverde D., Overkleeft H.S., Huebner J., Marel G.A. van der & Codee J.D.C. (2016), Synthesis of E. faecium wall teichoic acid fragments, Bioorganic & Medicinal Chemistry 24(17): 3893-3907.
- Zhang Q., Rijssel E.R. van, Overkleeft H.S., Marel G.A. van der & Codée J.D.C. (2016), On the Reactivity of Gulose and Guluronic Acid Building Blocks in the Context of Alginate Assembly, European Journal of Organic Chemistry 2016(14): 2393-2397.
- Schroder S., Petracca R., Minnee H., Artola M., Aerts J.M.F.G., Codée J.D.C., Marel G.A. van der & Overkleeft H.S. (2016), A Divergent Synthesis of L-arabino- and D-xylo-configured Cyclophellitol Epoxides and Aziridines, European Journal of Organic Chemistry : .
- Volbeda A.G., Reintjens N.R.M., Overkleeft H.S., Marel G.A. van der & Codée J.D.C. (2016), The Cyanopivaloyl Ester: A Protecting Group in the Assembly of Oligorhamnans, European Journal of Organic Chemistry 2016(31): 5282-5293.
- Jiang J., Kuo C.L., Wu L., Franke C., Kallemeijn W.W., Florea B.I., Meel H.M.M. van, Marel G.A. van der, Codée J.D.C., Boot R.G., Davies G.J., Overkleeft H.S. & Aerts J.M.F.G. (2016), Detection of Active Mammalian GH31 α-Glucosidases in Health and Disease Using In-Class, Broad-Spectrum Activity-Based Probes, ACS Central Science 2(5): 351-358.
- Zhang Q., Rijssel E.R. van, Walvoort M.T.C., Overkleeft H.S., Marel G.A. van der & Codée J.D.C. (2015), Acceptor reactivity in the total synthesis of alginate fragments containing α-L-guluronic acid and β-D-mannuronic acid, Angewandte Chemie (International Edition) 54(26): 7670-7673.
- Wisse P., Geus M.A.R. de, Cross G., Nieuwendijk A.M.C.H. van den, Rooden E.J. van, Berg R.J.B.H.N. van den, Aerts J.M.F.G., Marel G.A. van der, Codée J.D.C. & Overkleeft H.S. (2015), Synthesis of 6-Hydroxysphingosine and α-Hydroxy Ceramide Using a Cross-Metathesis Strategy, Journal of Organic Chemistry (JOC) 80(14): 7258-65.
- Jiang J., Beenakker T.J.M., Kallemeijn W.W., Marel G.A. van der, Elst H. van der, Codee J.D.C., Aerts J.M.F.G. & Overkleeft H.S. (2015), Comparing Cyclophellitol N-Alkyl and N-Acyl Cyclophellitol Aziridines as Activity-Based Glycosidase Probes, Chemistry: a European Journal 21(30): 10861-10869.
- Volbeda A.G., Kistemaker H.A.V., Overkleeft H.S., Marel G.A. van der, Filippov D.V. & Codee J.D.C. (2015), Chemoselective cleavage of p-methoxybenzyl and 2-naphthylmethyl ethers using a catalytic amount of HCl in hexafluoro-2-propanol, Journal of Organic Chemistry (JOC) 80(17): 8796-8806.
- Wong C.S., Hoogendoorn S., Marel G.A. van der, Overkleeft H.S. & Codee J.D.C. (2015), Targeted Delivery of Fluorescent High-Mannose-Type Oligosaccharide Cathepsin Inhibitor Conjugates, ChemPlusChem 80(6): 928-937.
- Jiang J., Kallemeijn W.W., Wright D.W., Nieuwendijk A.M.C.H. van den, Coco Rohde V., Folch E.C., Elst H. van den, Florea B.I., Scheij S., Donker-Koopman W.E., Verhoek M., Li N., Schürmann M., Mink D., Boot R.G., Codée J.D.C., Marel G.A. van der, Davies G.J., Aerts J.M.F.G. & Overkleeft H.S. (2015), In vitro and in vivo comparative and competitive activity-based protein profiling of GH29 alpha-L-fucosidases, Chemical Science 6(5): 2782-2789.
- Rijssel E.R. van, Delft P. van, Marle D.V. van, Bijvoets S.M., Lodder G., Overkleeft H.S., Marel G.A. van der, Filippov D.V. & Codee J.D.C. (2015), Stereoselectivity in the Lewis Acid Mediated Reduction of Ketofuranoses, Journal of Organic Chemistry (JOC) 80(9): 4553-4565.
- Berg R.J.B.H.N. van der, Rijssel E.R. van, Ferraz M.J., Houben J., Strijland A., Donker-Koopman W.E., Wennekes T., Bonger K.M., Ghisaidoobe A.B.T., Hoogendoorn S., Marel G.A. van der, Codee J.D.C., Overkleeft H.S. & Aerts J.M.F.G. (2015), Synthesis and Evaluation of Hybrid Structures Composed of Two Glucosylceramide Synthase Inhibitors, ChemMedChem 10(12): 2042-2062.
- Wisse P., Gold H., Mirzaian M., Guimaraes Da Lomba Ferraz M.J., Lutteke G., Berg R.J.B.H.N. van den, Elst H. van den, Lugtenburg J., Marel G.A. van der, Aerts J.M.F.G., Codee J.D.C. & Overkleeft H.S. (2015), Synthesis of a panel of carbon-13-labelled (glyco)sphingolipids, European Journal of Organic Chemistry 2015(12): 2661-2677.
- Kallemeijn W.W., Witte M.D., Voorn-Brouwer T.M., Walvoort M.T.C., Li K.Y., Codee J.D.C., Marel G.A. van der, Boot R.G., Overkleeft H.S. & Aerts J.M.F.G. (2014), A Sensitive Gel-Based Method Combining Distinct Cyclophellitol-Based Probes for the Identification of Acid/Base Residues in Human Retaining Beta-Glucosidases, Journal of Biological Chemistry 289(51): 35351-35362.
- Baker P., Ricer T., Moynihan P.J., Kitova E.N., Walvoort M.T.C., Little D.J., Whitney J.C., Dawson K., Weadge J.T., Robinson H., Ohman D.E., Codee J.D.C., Klassen J.S., Clarke A.J. & Howell P.L. (2014), P. aeruginosa SGNH Hydrolase-Like Proteins AlgJ and AlgX Have Similar Topology but Separate and Distinct Roles in Alginate Acetylation, PLoS Pathogens 10(8): e1004334.
- Duivenvoorden B.A., Ghauharali K., Scheij S., Boot R.G., Aerts J.M.F.G., Marel G.A. van der, Overkleeft H.S. & Codee J.D.C. (2014), Design and synthesis of 4 '-O-alkyl-chitobiosyl-4-methylumbelliferone as human chitinase fluorogenic substrates, Carbohydrate Research 399: 26-37.
- Li K.Y., Jiang J., Witte M.D., Kallemeijn W.W., Donker-Koopman W.E., Boot R.G., Aerts J.M.F.G., Codee J.D.C., Marel G.A. van der & Overkleeft H.S. (2014), Exploring functional cyclophellitol analogues as human retaining beta-glucosidase inhibitors, 12(39): 7786-7791.
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- Li K.-Y., Kallemeijn W.W., Jiang J., Walvoort M.T.C., Willems L.I., Beenakker T., Elst H. van den, Marel G.A. van der, Codée J.D.C., Aerts J.M.F.G., Florea B.I., Boot R.G., Witte M.D. & Overkleeft H.S. (2014), Rational Design of Activity-Based Retaining β-Exoglucosidase Probes. In: Waldmann H. & Janning P. (Eds.), Concepts and Case Studies in Chemical Biology: Wiley. 191-206.
- Jong A.R. de, Hagen B., Sheerin K., Codée J.D.C. & Marel G.A. van der (2014), Hydrolysis of Thioglycosides using Anhydrous NIS and TFA. In: Marel G.A. van der & Codee J.D.C. (Eds.), Carbohydrate Chemistry: Proven Synthetic Methods no. 2: CRC Press. 71-76.
- Marel G.A. van der & Codee J. (2014), Carbohydrate Chemistry: Proven Synthetic Methods no. 2: CRC Press.
- Willems Lianne I., Jiang Jianbing, Li Kah-Yee, Witte Martin D., Kallemeijn Wouter W., Beenakker Thomas J.N., Schroeder Sybrin P., Aerts Johannes M.F.G., Van der Marel Gijsbert A., Codee Jeroen D.C. & Overkleeft Hermen S. (2014), From Covalent Glycosidase Inhibitors to Activity-Based Glycosidase Probes, Chemistry: a European Journal 20(35): 10864-10872.
- Willems Marian M.J.H.P., Zom Gijs G., Khan Selina, Meeuwenoord Nico, Melief Cornelis J.M., Van der Stelt Mario, Overkleeft Herman S., Codee Jeroen D.C., Van der Marel Gijsbert A., Ossendorp Ferry & Filippov Dmitri V. (2014), N-Tetradecylcarbamyl Lipopeptides as Novel Agonists for Toll-like Receptor 2, Journal of Medicinal Chemistry 57(15): 6873-6878.
- Willems M.M.J.H.P., Zom G.G., Meeuwenoord N., Ossendorp F.A., Overkleeft H.S., Van der Marel G.A., Codee J.D.C. & Filippov D.V. (2014), Design, automated synthesis and immunological evaluation of NOD2-ligand-antigen conjugates, Beilstein Journal of Organic Chemistry 10: 1445-1453.
- Castelli Riccardo, Schindler Severin, Walter Sebastian M., Kniep Florian, Overkleeft Herman S., Van der Marel Gijsbert A., Huber Stefan M. & Codee Jeroen D.C. (2014), Activation of Glycosyl Halides by Halogen Bonding, Chemistry - An Asian Journal 9(8): 2095-2098.
- Wolfram F., Kitova E.N., Robinson H., Walvoort M.T.C., Codee J.D.C., Klassen J.S. & Howell P.L. (2014), Catalytic Mechanism and Mode of Action of the Periplasmic Alginate Epimerase AlgG, Journal of Biological Chemistry 289(9): 6006-6019.
- Laverde D., Wobser D., Romero-Saavedra F., Hogendorf W., Marel G.A. van der, Berthold M., Kropec A., Codee J.D.C. & Huebner J. (2014), Synthetic Teichoic Acid Conjugate Vaccine against Nosocomial Gram-Positive Bacteria, PLoS ONE 9(11): e110953.
- Li Kah-Yee, Jiang Jianbing, Witte Martin D., Kallemeijn Wouter W., Van den Elst Hans, Wong Chung-Sing, Chander Sharina D., Hoogendoorn Sascha, Beenakker Thomas J.M., Codee Jeroen D.C., Aerts Johannes M.F.G., Van der Marel Gijs A. & Overkleeft Herman S. (2014), Synthesis of Cyclophellitol, Cyclophellitol Aziridine, and Their Tagged Derivatives, (27): 6030-6043.
- Van Rijssel Erwin R., Van Delft Pieter, Lodder Gerrit, Overkleeft Herman S., Van der Marel Gijsbert A., Filippov Dmitri V. & Codee Jeroen D.C. (2014), Furanosyl Oxocarbenium Ion Stability and Stereoselectivity, 53(39): 10381-10385.
- Frihed Tobias Gylling, Walvoort Marthe T.C., Codee Jeroen D.C., Van der Marel Gijs A., Bols Mikael & Pedersen Christian Marcus (2013), Influence of O6 in Mannosylations Using Benzylidene Protected Donors: Stereoelectronic or Conformational Effects?, Journal of Organic Chemistry (JOC) 78(6): 2191-2205.
- Castelli Riccardo, Overkleeft Herman S., Van der Marel Gijsbert A. & Codee Jeroen D.C. (2013), 2,2-Dimethyl-4-(4-methoxy-phenoxy) butanoate and 2,2-Dimethyl-4-azido Butanoate: Two New Pivaloate-ester-like Protecting Groups, 15(9): 2270-2273.
- Van Rijssel Erwin R., Goumans Theodorus P.M., Lodder Gerrit, Overkleeft Herman S., Van der Marel Gijsbert A. & Codee Jeroen D.C. (2013), Chiral Pyrroline-Based Ugi-Three-Component Reactions Are under Kinetic Control, 15(12): 3026-3029.
- Ronnols Jerk, Walvoort Marthe T.C., Van der Marel Gijsbert A., Codee Jeroen D.C. & Widmalm Goran (2013), Chair interconversion and reactivity of mannuronic acid esters, 11(46): 8127-8134.
- De Jong Ana R., Volbeda Anne G., Hagen Bas, Van den Elst Hans, Overkleeft Herman S., Van der Marel Gijsbert A. & Codee Jeroen D.C. (2013), A Second-Generation Tandem Ring-Closing Metathesis Cleavable Linker for Solid-Phase Oligosaccharide Synthesis, European Journal of Organic Chemistry 2013(29): 6644-6655.
- Walvoort Marthe T.C., Van der Marel Gijsbert A., Overkleeft Herman S. & Codee Jeroen D.C. (2013), On the reactivity and selectivity of donor glycosides in glycochemistry and glycobiology: trapped covalent intermediates, Chemical Science 4(3): 897-906.
- Christina A.E., Marel G.A. van der & Codeé J.D.C. (2013), Recent developments in the construction of cis-glycosidic linkages. In: Werz D.B. & Vidal S. (Eds.), Modern Synthetic Methods in Carbohydrate Chemistry. From Monosaccharides to Complex Glycoconjugates: Wiley.
- Gold H., Mirzaian M., Dekker N., Joao Ferraz M., Lugtenburg J., Codee J.D.C., Marel G.A. van der, Overkleeft H.S., Linthorst G.E., Groener J.E.M., Aerts J.M.F.G. & Poorthuis B.J.H.M. (2013), Quantification of Globotriaosylsphingosine in Plasma and Urine of Fabry Patients by Stable Isotope Ultraperformance Liquid Chromatography-Tandem Mass Spectrometry, Clinical Chemistry 59(3): 547-556.
- Riley L.M., Weadge J.T., Baker P., Robinson H., Codee J.D.C., Tipton P.A., Ohman D.E. & Howell P.L. (2013), Structural and Functional Characterization of Pseudomonas aeruginosa AlgX ROLE OF AlgX IN ALGINATE ACETYLATION, Journal of Biological Chemistry 288(31): 22299-22314.
- Gold H., Mirzaian M., Dekker N., Joao Ferraz M., Lugtenburg J., Codée J.D., Van der Marel G.A., Overkleeft H.S., Linthorst G.E., Groener J.E.M., Aerts J.M. & Poorthuis B.J.H.M. (2012), Quantification of globotriaosylsphingosine in plasma and urine of Fabry patients by stable isotope ultraperformance liquid chromatography-tandem mass spectrometry, Clinical Chemistry 59(3): 547–556.
- De Jong A.R., Hagen B., Van der Ark V., Overkleeft H.S., Codee J.D.C. & Van der Marel G.A. (2012), Exploring and Exploiting the Reactivity of Glucuronic Acid Donors, Journal of Organic Chemistry (JOC) 77(1): .
- Hogendorf W.F.J., Lameijer L.N., Beenakker T.J.M., Overkleeft H.S., Filippov D.V., Codee J.D.C. & Van der Marel G.A. (2012), Fluorous Linker Facilitated Synthesis of Teichoic Acid Fragments, 14(3): .
- Kallemeijn W.W., Li K.Y., Witte M.D., Marques A.R.A., Aten J., Scheij S., Jiang J., Willems L.I., Voorn-Brouwer T.M., Roomen C.P.A.A. van, Ottenhoff R., Boot R.G., Elst H. van den, Walvoort M.T.C., Florea B.I., Codee J.D.C., Marel G.A. van der, Aerts J.M.F.G. & Overkleeft H.S. (2012), Novel Activity-Based Probes for Broad-Spectrum Profiling of Retaining beta-Exoglucosidases In Situ and In Vivo, Angewandte Chemie (International Edition) 51(50): 12529-12533.
- Walvoort M.T.C., Van den Elst H., Plante O.J., Krock L., Seeberger P.H., Overkleeft H.S., Van der Marel G.A. & Codee J.D.C. (2012), Automated Solid-Phase Synthesis of beta-Mannuronic Acid Alginates, Angewandte Chemie - International Edition in English 51(18): .
- Christina A.E., Muns J.A., Olivier J.Q.A., Visser L., Hagen B., Van den Bos L.J., Overkleeft H.S., Codee J.D.C. & Van der Marel G.A. (2012), On the Reactivity and Selectivity of Galacturonic Acid Lactones, European Journal of Organic Chemistry (29): .
- Christina A.E., Ferrando V.M.B., De Bordes F., Spruit W.A., Overkleeft H.S., Codee J.D.C. & Van der Marel G.A. (2012), Multigram-scale synthesis of an orthogonally protected 2-acetamido-4-amino-2,4,6-trideoxy-D-galactose (AAT) building block, Carbohydrate Research 356: .
- Hogendorf W.F.J., Kropec A., Filippov D.V., Overkleeft H.S., Huebner J., Van der Marel G.A. & Codee J.D.C. (2012), Light fluorous synthesis of glucosylated glycerol teichoic acids, Carbohydrate Research 356: .
- Barroso S., Castelli R., Baggelaar M.P., Geerdink D., Ter Horst B., Casas-Arce E., Overkleeft H.S., Van der Marel G.A., Codee J.D.C. & Minnaard A.J. (2012), Total Synthesis of the Triglycosyl Phenolic Glycolipid PGL-tb1 from Mycobacterium tuberculosis, Angewandte Chemie - International Edition in English 51(47): .
- Theilacker C., Kropec A., Hammer F., Sava I., Wobser D., Sakinc T., Codee J.D.C., Hogendorf W.F.J., Van der Marel G.A. & Huebner J. (2012), Protection Against Staphylococcus aureus by Antibody to the Polyglycerolphosphate Backbone of Heterologous Lipoteichoic Acid, The Journal of Infectious Diseases 205(7): .
- Walvoort M.T.C., Kallemeijn W.W., Willems L.I., Witte M.D., Aerts J.M.F.G., Van der Marel G.A., Codee J.D.C. & Overkleeft H.S. (2012), Tuning the leaving group in 2-deoxy-2-fluoroglucoside results in improved activity-based retaining beta-glucosidase probes, Chemical Communications 48(84): .
- Christina A.E., Van der Es D., Dinkelaar J., Overkleeft H.S., Van der Marel G.A. & Codee J.D.C. (2012), beta-Rhamnosides from 6-thio mannosides, Chemical Communications 48(21): .
- Walvoort M.T.C., Volbeda A.G., Reintjens N.R.M., Van den Elst H., Plante O.J., Overkleeft H.S., Van der Marel G.A. & Codee J.D.C. (2012), Automated Solid-Phase Synthesis of Hyaluronan Oligosaccharides, 14(14): .
- Walvoort M.T.C., De Witte W., Van Dijk J., Dinkelaar J., Lodder G., Overkleeft H.S., Codee J.D.C. & Van der Marel G.A. (2011), Mannopyranosyl Uronic Acid Donor Reactivity, Organic Letters 13(16): 4360-4363.
- Codee J.D.C., Christina A.E., Walvoort M.T.C., Overkleeft H.S. & Van der Marel G.A. (2011), Uronic Acids in Oligosaccharide and Glycoconjugate Synthesis, Topics in Current Chemistry 301: .
- Witte M.D., Walvoort M.T.C., Li K.Y., Kallemeijn W.W., Donker-Koopman W.E., Boot R.G., Aerts J.M.F.G., Codee J.D.C., Marel G.A. van der & Overkleeft H.S. (2011), Activity-Based Profiling of Retaining beta-Glucosidases: A Comparative Study, ChemBioChem 12(8): 1263-1269.
- Gold H., Munneke S., Dinkelaar J., Overkleeft H.S., Aerts J.M.F.G., Codee J.D.C. & Van der Marel G.A. (2011), A practical synthesis of capped 4-methylumbelliferyl hyaluronan disaccharides and tetrasaccharides as potential hyaluronidase substrates, Carbohydrate Research 346(12): .
- Gold H., Boot R.G., Aerts J.M.F.G., Overkleeft H.S., Codee J.D.C. & Marel G.A. van der (2011), A Concise Synthesis of Globotriaosylsphingosine, European Journal of Organic Chemistry (9): 1652-1663.
- Codeé J.D.C., Christina A.E., Walvoort M.T.C., Overkleeft H.S. & Marel G.A. van der (2011), Uronic Acids in Oligosaccharide and Glycoconjugate Synthesis. In: Fraser-Reid B. & Cristóbal-López J. (Eds.), Reactivity Tuning in Oligosaccharide Assembly no. 301: Springer-Verlag Berlin Heidelberg. 253-289.
- Gold H., Descroix K., Codeé J.D.C. & Marel G.A. van der (2011), Synthesis of Sugar Nucleotides: A Phosphoramidite Approach. In: Kováč P. (Ed.), Carbohydrate Chemistry: Proven Synthetic Methods no. 1: CRC Press. 107-113.
- Walvoort M.T.C., Sail D., Codée J.D.C. & Marel G.A. van der (2011), Synthesis of Methyl Glycuronates by Chemo- and Regioselective TEMPO/BAIB-Oxidation. In: Kováč P. (Ed.), Carbohydrate Chemistry: Proven Synthetic Methods no. 1: CRC Press. 99-106.
- Codée J.D.C., Boltje T.J. & Marel G.A. van der (2011), Diphenylsulfoxide-Trifluoromethanesulfonic Anhydride: a Potent Activator for Thioglycosides. In: Kováč P. (Ed.), Carbohydrate Chemistry: Proven Synthetic Methods no. 1: CRC Press. 67-72.
- Walvoort M.T.C., Moggre G.J., Lodder G., Overkleeft H.S., Codee J.D.C. & Van der Marel G.A. (2011), Stereoselective Synthesis of 2,3-Diamino-2,3-dideoxy-beta-D-mannopyranosyl Uronates, Journal of Organic Chemistry (JOC) 76(18): .
- Hogendorf W.F.J., Meeuwenoord N.J., Overkleeft H.S., Filippov D.V., Laverde D., Kropec A., Huebner J., Van der Marel G.A. & Codee J.D.C. (2011), Automated solid phase synthesis of teichoic acids, Chemical Communications 47(31): .
- Codee J.D.C., Ali A., Overkleeft H.S. & Van der Marel G.A. (2011), Novel protecting groups in carbohydrate chemistry, Comptes Rendus Chimie 14(2-3): 178-193.
- Christina A.E., Van den Bos L.J., Overkleeft H.S., Van der Marel G.A. & Codee J.D.C. (2011), Galacturonic Acid Lactones in the Synthesis of All Trisaccharide Repeating Units of the Zwitterionic Polysaccharide Sp1, Journal of Organic Chemistry (JOC) 76(6): .
- Walvoort M.T.C., Lodder G., Overkleeft H.S., Codee J.D.C. & Van der Marel G.A. (2010), Mannosazide Methyl Uronate Donors. Glycosylating Properties and Use in the Construction of beta-ManNAcA-Containing Oligosaccharides, Journal of Organic Chemistry (JOC) 75(23): .
- Dinkelaar J., Duivenvoorden B.A., Wennekes T., Overkleeft H.S., Boot R.G., Aerts J.M.F.G., Codee J.D.C. & Van der Marel G.A. (2010), A Preparative Synthesis of Human Chitinase Fluorogenic Substrate (4'-Deoxychitobiosyl)-4-methylumbelliferone, European Journal of Organic Chemistry (13): 2565-2570.
- Ali A., Van den Berg R.J.B.H.N., Overkleeft H.S., Van der Marel G.A. & Codee J.D.C. (2010), The methylsulfonylethoxymethyl (Msem) as a hydroxyl protecting group in oligosaccharide synthesis, Tetrahedron 66(32): .
- Walvoort M.T.C., Lodder G., Mazurek J., Overkleeft H.S., Codee J.D.C. & Marel G.A. van der (2009), Equatorial Anomeric Triflates from Mannuronic Acid Esters, Journal of the American Chemical Society 131(34): 12080-+.
- Ali A., Berg R.J.B.H.N. van den, Overkleeft H.S., Filippov D.V., Marel G.A. van der & Codee J.D.C. (2009), Methylsulfonylethoxycarbonyl (Msc) and fluorous propylsulfonylethoxycarbonyl (FPsc) as hydroxy-protecting groups in carbohydrate chemistry, Tetrahedron Letters 50(19): 2185-2188.
- Codee J.D.C., Bos L.J. van den, Jong A.R. de, Dinkelaar J., Lodder G., Overkleeft H.S. & Marel G.A. van der (2009), The Stereodirecting Effect of the Glycosyl C5-Carboxylate Ester: Stereoselective Synthesis of beta-Mannuronic Acid Alginates, Journal of Organic Chemistry (JOC) 74(1): 38-47.
- Dinkelaar J., Gold H., Overkleeft H.S., Codee J.D.C. & Marel G.A. van der (2009), Synthesis of Hyaluronic Acid Oligomers using Chemoselective and One-Pot Strategies, Journal of Organic Chemistry (JOC) 74(11): 4208-4216.
- Dinkelaar J., Jong A.R. de, Meer R. van, Somers M., Lodder G., Overkleeft H.S., Codee J.D.C. & Marel G.A. van der (2009), Stereodirecting Effect of the Pyranosyl C-5 Substituent in Glycosylation Reactions, Journal of Organic Chemistry (JOC) 74(14): 4982-4991.
- Codee J.D.C., Jong A.R. de, Dinkelaar J., Overkleeft H.S. & Marel G.A. van der (2009), Stereo selectivity of glycosylations of conformationally restricted mannuronate esters, Tetrahedron 65(18): 3780-3788.
- Dinkelaar J., Bos L.J. van den, Hogendorf W.F.J., Lodder G., Overkleeft H.S., Codee J.D.C. & Marel G.A. van der (2008), Stereoselective Synthesis of L-Guluronic Acid Alginates, Chemistry: a European Journal 14: 9400-9411.
- Gold H., Delft P. van, Meeuwenoord N.J., Codee J.D.C., Filippov D.V., Eggink G., Overkleeft H.S. & Marel G.A. van der (2008), Synthesis of Sugar Nucleotides by Application of Phosphoramidites, Journal of Organic Chemistry (JOC) 73: 9458-9460.
- Dinkelaar J., Codee J.D.C. & et al (2007), Synthesis of hyaluronic acid oligomers using Ph2SO/Tf2O-mediated glycosylations, Journal of Organic Chemistry (JOC) 72(15): 5737-5742.
- Litjens R.E.J.N., Bos L.J. van den, Codee J.D.C., Overkleeft H.S. & Marel G.A. van der (2007), The use of cyclic bifunctional protecting groups in oligosaccharide synthesis - an overview, Carbohydrate Research 342(3-4): 419-429.
- Marel G.A. van der, Bos L.J. van den, Overkleeft H.S., Litjens R.E.J.N. & Codee J.D.C. (2007), Sequential Glycosylation Strategies: A Focus on Thioglycosides as Donors and Acceptors, FRONTIERS IN MODERN CARBOHYDRATE CHEMISTRY 960: 190-208.
- Bos L.J. van den, Codee J.D.C., Litjens R.E.J.N., Dinkelaar J., Overkleeft H.S. & Marel G.A. van der (2007), Uronic acids in oligosaccharide synthesis, European Journal of Organic Chemistry 24: 3963-3976.
- Codee J.D.C., Stubba B., Schiattarella M., Overkleeft H.S., Boeckel C.A.A. van, Boom J.H. van & Marel G.A. van der (2005), A modular strategy toward the synthesis of heparin-like oligosaccharides using monomeric building blocks in a sequential glycosylation strategy, Journal of the American Chemical Society 127(11): 3767-3773.
- Codee J.D.C., Litjens R.E.J.N., Bos L.J. van den, Overkleeft H.S. & Marel G.A. van der (2005), Thioglycosides in sequential glycosylation strategies, Chemical Society Reviews 34(9): 769-782.
- Litjens R.E.J.N., Bos L.J. van den, Codee J.D.C., Berg R.J.B.H.N. van den, Overkleeft H.S. & Marel G.A. van der (2005), Sulfonium triflate mediated glycosidations of aryl 2-azido-2-deoxy-1-thio-D-mannosides, European Journal of Organic Chemistry (5): 918-924.
- Codee J.D.C., Litjens R.E.J.N., Bos L.J. van den, Overkleeft H.S. & Marel G.A. van der (2005), Thioglycosides in sequential glycosylation strategies, Chemical Society Reviews 34(9): 769-782.
- Litjens R.E.J.N., Hoogerhout P., Filippov D.V., Codee J.D.C., Bos L.J. van den, Berg R.J.B.H.N. van den, Overkleeft H.S. & Marel G.A. van der (2005), Synthesis of an alpha-Gal epitope alpha-D-Galp-(1 -> 3)-beta-D-Galp-(1 -> 4)-beta-D-Glcp NAc-lipid conjugate, Journal of Carbohydrate Chemistry 24(7): 755-769.
- Litjens R.E.J.N., Bos L.J. van den, Codee J.D.C., Berg R.J.B.H.N. van den, Overkleeft H.S. & Marel G.A. van der (2005), Sulfonium triflate mediated glycosidations of aryl 2-azido-2-deoxy-1-thio-D-mannosides, European Journal of Organic Chemistry (5): 918-924.
- Bos L.J. van den, Codee J.D.C., Toorn J.C. van der, Boltje T.J., Boom J.H. van, Overkleeft H.S. & Marel G.A. van der (2004), Thioglycuronides: Synthesis and application in the assembly of acidic oligosaccharides, 6(13): 2165-2168.
- Codee J.D.C., Bos L.J. van den, Litjens R.E.J.N., Overkleeft H.S., Boeckel C.A.A. van, Boom J.H. van & Marel G.A. van der (2004), Chemoselective glycosylations using sulfonium triflate activator systems, Tetrahedron 60(5): 1057-1064.
- Codée J.D., Overkleeft H.S., Marel G.A. van der & Boeckel C.A. van (2004), The synthesis of well-defined heparin and heparan sulfate fragments, Drug Discovery Today: Technologies 1(3): 317-26.
- Timmer M.S.M., Codee J.D.C., Overkleeft H.S., Boom J.H. van & Marel G.A. van der (2004), A tandem ring-closing metathesis cleavable linker system for solid-phase oligosaccharide synthesis, Synlett: Accounts and Rapid Communications in Chemical Synthesis (12): 2155-2158.
- Codee J.D.C., Bos L.J. van den, Litjens R.E.J.N., Overkleeft H.S., Boom J.H. van & Marel G.A. van der (2003), Sequential one-pot glycosylations using1-hydroxyl and 1-thiodonors, 5: 1947-1950.
- Bos L.J. van den, Codée J.D.C., Boom J.H. van, Overkleeft H.S. & Marel G.A. van der (2003), A novel strategy towards the synthesis of orthogonally functionalised 4-aminoglycosides, ORGANIC & BIOMOLECULAR CHEMISTRY 1: 4160.
- Codee J.D.C., Litjens R.E.J.N., Heeten R. den, Overkleeft H.S., Boom J.H. van & Marel G.A. van der (2003), Ph2SO/Tf2O: a powerful promotor system in chemoselective glycosylations using thioglycosides, Organical Letters 5: 1519-1522.
- Ovaa H., Lastdrager B., Codee J.D.C., Marel G.A. van der, Overkleeft H.S. & Boom J.H. van (2002), A flexible synthesis of cyclopenditol derivatives based on ring-closing metathesis of carbohydrate-derived 1,6-dienes, Journal of the Chemical Society Perkin Transactions 1 21: 2370-2377.
- Codee J.D.C., Marel G.A. van der, Boeckel C.A.A. van & Boom J.H. van (2002), Probing the heparin - Antithrombin III interaction using synthetic pentasaccharides bearing positively charged groups, European Journal of Organic Chemistry 23: 3954-3965.
- Leeuwenburgh M.A., Litjens R.E.J.N., Codee J.D.C., Overkleeft H.S., Marel G.A. van der & Boom J.H. van (2000), Radical cyclization of sugar-derived beta-(alkynyloxy)acrylates: Synthesis of novel fused ethers, Organical Letters 2: 1275-1277.
- Ovaa H., Codee J.D.C., Lastdrager B., Overkleeft H.S., Marel G.A. van der & Boom J.H. van (1999), A versatile approach to the synthesis of highly functionalised carbocycles, Tetrahedron 40: 5063.
- Ovaa H., Codee J.D.C., Lastdrager B., Overkleeft H.S., Marel G.A. van der & Boom J.H. van (1998), A stereoselective and efficient route to (3S,4R,5S)-(+)-4,5-dihydroxy-cyclopent-1-en-3-ylamine: The side chain of the hypermodified nucleoside Q, Tetrahedron Letters 39: 7987-7990.