Boudewijn Lelieveldt
Professor Biomedical Imaging
- Name
- Prof.dr.ir. B.P.F. Lelieveldt
- Telephone
- +31 71 526 1130
- b.p.f.lelieveldt@lumc.nl
- ORCID iD
- 0000-0001-8269-7603
Boudewijn P.F. Lelieveldt is professor of Biomedical Imaging at the Department of Radiology, Leiden University Medical Center, Leiden, the Netherlands, where he is heading the Division of Image Processing (LKEB). He is also appointed as Medical Delta professor at the at Delft University of Technology in the context of the Medical Delta consortium.
More information about Boudewijn Lelieveldt
Boudewijn P.F. Lelieveldt is professor of Biomedical Imaging at the Department of Radiology, Leiden University Medical Center, Leiden, the Netherlands, where he is heading the Division of Image Processing (LKEB). He is also appointed as Medical Delta professor at the at Delft University of Technology in the context of the Medical Delta consortium.
Biomedical Imaging
Nowadays, imaging data is omnipresent in health care and life sciences. They are used to support diagnosis and therapy, but also to derive novel insights into the inner workings of cells and their interactions. The demand for quantitative measurements in these complex and heterogeneous imaging data sets is therefore rapidly expanding. My scientific discipline is a part of computer science, and aims to develop novel computer methods that can automatically extract relevant measurements from biomedical imaging data. Main challenge is to make the translation between what is required in clinical practice and life-sciences on the one hand, and the recent technological developments in computer science on the other hand. My core research revolves around two questions: How do you teach a computer “to see with the prior experience of a human, and with the accuracy of a machine?”, and “How to visualize and interact with complex high-dimensional image data?”, with applications in clinical imaging and biology.
Academic career
1994 Master of Science, Tu Delft 'Quantification of shoulder anatomy from MRI for biomechanical modeling'
1999 PhD Leiden University, thesis title 'Anatomical models in cardiovascular imaging'
2001 Assistant Professor LUMC
2006 Associate Professor LUMC & TU Delft
2011 Medical Delta Professor Biomedical Imaging LUMC & TU Delft. Inaugural address 19-10-2012
2011 Research Director Division of Image Processing, department of Radiology, LUMC
Prizes and honourable appointments
Boudewijn Lelieveldt is an Affiliated Investigator at the Allen Institute for Brain Science in Seattle, with a close collaboration on 1) the development of fast and interactive data analysis methods for spatial transcriptomics and single cell data (BrainScope, Cytosplore), and 2) deploying the Allen Brain Atlases in the LUMC translational neuroscience research program.
Professor Biomedical Imaging
- Faculteit Geneeskunde
- Divisie 2
- Radiologie
- Zhang, Y.; Miller, J.A.; Park, J.; Lelieveldt, B.P.; Long, B.; Abdelaal, T.; Aevermann, B.D.; Biancalani, T.; Comiter, C.; Dzyubachyk, O.; Eggermont, J.; Langseth, C.M.; Petukhov, V.; Scalia, G.; Vaishnav, E.D.; Zhao, Y.L.; Lein, E.S. & Scheuermann, R.H. (2023), Reference-based cell type matching of in situ image-based spatial transcriptomics data on primary visual cortex of mouse brain, Scientific Reports 13(1).
- Jorstad, N.L.; Song, J.H.T.; Exposito-Alonso, D.; Suresh, H.; Castro-Pacheco, N.; Krienen, F.M.; Yanny, A.M.; Close, J.; Gelfand, E.; Long, B.; Seeman, S.C.; Travaglini, K.J.; Basu, S.; Beaudin, M.; Bertagnolli, D.; Crow, M.; Ding, S.L.; Eggermont, J.; Glandon, A.; Goldy, J.; Kiick, K.; Kroes, T.; Mcmillen, D.; Pham, T.; Rimorin, C.; Siletti, K.; Somasundaram, S.; Tieu, M.; Torkelson, A.; Feng, G.P.; Hopkins, W.D.; Höllt, T.; Keene, C.D.; Linnarsson, S.; Mccarroll, S.A.; Lelieveldt, B.P.; Sherwood, C.C.; Smith, K.; Walsh, C.A.; Dobin, A.; Gillis, J.; Lein, E.S.; Hodge, R.D. & Bakken, T.E. (2023), Comparative transcriptomics reveals human-specific cortical features, Science 382(6667).
- Hawrylycz, M.; Martone, M.E.; Ascoli, G.A.; Bjaalie, J.G.; Dong, H.W.; Ghosh, S.S.; Gillis, J.; Hertzano, R.; Haynor, D.R.; Hof, P.R.; Kim, Y.; Lein, E.; Liu, Y.F.; Miller, J.A.; Mitra, P.P.; Mukamel, E.; Ng, L.; Osumi-Sutherland, D.; Peng, H.C.; Ray, P.L.; Sanchez, R.; Regev, A.; Ropelewski, A.; Scheuermann, R.H.; Tan, S.Z.K.; Thompson, C.L.; Tickle, T.; Tilgner, H.; Varghese, M.; Wester, B.; White, O.; Zeng, H.K.; Aevermann, B.; Allemang, D.; Ament, S.; Athey, T.L.; Baker, C.; Baker, K.S.; Baker, P.M.; Bandrowski, A.; Banerjee, S.; Bishwakarma, P.; Carr, A.; Chen, M.; Choudhury, R.; Cool, J.; Creasy, H.; D'Orazi, F.; Degatano, K.; Dichter, B.; Ding, S.L.; Dolbeare, T.; Ecker, J.R.; Fang, R.X.; Fillion-Robin, J.C.; Fliss, T.P.; Gee, J.; Gillespie, T.; Gouwens, N.; Zhang, G.Q.; Halchenko, Y.O.; Harris, N.L.; Herb, B.R.; Hintiryan, H.; Hood, G.; Horvath, S.; Huo, B.X.; Jarecka, D.; Jiang, S.D.; Khajouei, F.; Kiernan, E.A.; Kir, H.; Kruse, L.; Lee, C.K.Y.; Lelieveldt, B.; Li, Y.; Liu, H.Q.; Liu, L.J.; Markuhar, A.; Mathews, J.; Mathews, K.L.; Mezias, C.; Miller, M.I.; Mollenkopf, T.; Mufti, S.; Mungall, C.J.; Orvis, J.; Puchades, M.A.; Qu, L.; Receveur, J.P.; Ren, B.; Sjoquist, N.; Staats, B.; Tward, D.; Velthoven, C.T.J. van; Wang, Q.X.; Xie, F.M.; Xu, H.; Yao, Z.Z.; Yun, Z.X.; Zhang, Y.R.; Zheng, W.J. & Zingg, B. (2023), A guide to the BRAIN initiative cell census network data ecosystem, PLoS Biology 21(6).
- Brouwer, T.P.; Vries, N.L. de; Abdelaal, T.; Krog, R.T.; Li, Z.; Ruano, D.; Farina, A.; Lelieveldt, B.P.F.; Morreau, H.; Bonsing, B.A.; Vahrmeijer, A.L.; Koning, F. & Miranda, N.F.C.C. de (2022), Local and systemic immune profiles of human pancreatic ductal adenocarcinoma revealed by single-cell mass cytometry, Journal for ImmunoTherapy of Cancer 10(7).
- Unen, V. van; Ouboter, L.F.; Li, N.; Schreurs, M.; Abdelaal, T.; Kooy-Winkelaar, Y.; Beyrend, G.; Hoellt, T.; Maljaars, P.W.J.; Mearin, M.L.; Mahfouz, A.; Witte, A.M.C.; Clemens, C.H.M.; Abraham, S.; Escher, J.C.; Lelieveldt, B.P.F.; Pascutti, M.F.; Jong, A.E.V.E. de & Koning, F. (2022), Identification of a disease-associated network of intestinal immune cells in treatment-naive inflammatory bowel disease, Frontiers in Immunology 13.
- Neve, O.M.; Chen, Y.J.; Tao, Q.; Romeijn, S.R.; Boer, N.P. de; Grootjans, W.; Kruit, M.C.; Lelieveldt, B.P.F.; Jansen, J.C.; Hensen, E.F.; Verbist, B.M. & Staring, M. (2022), Fully automated 3D vestibular schwannoma segmentation with and without gadolinium-based contrast material, Radiology: Artificial Intelligence 4(4).
- Zhou, Z.X.; , X.R. zu; Wang, Y.Y.; Lelieveldt, B.P.F. & Tao, Q. (2022), Deep recursive embedding for high-dimensional data, IEEE Transactions on Visualization and Computer Graphics 28(2): 1237-1248.
- Kenkhuis, B.; Somarakis, A.; Haan, L. de; Dzyubachyk, O.; IJsselsteijn, M.E.; Miranda, N.F.C.C. de; Lelieveldt, B.P.F.; Dijkstra, J.; Roon-Mom, W.M.C. van; Hollt, T. & Weerd, L. van der (2021), Iron loading is a prominent feature of activated microglia in Alzheimer's disease patients, Acta Neuropathologica Communications 9(1).
- Jong, S.E. de; Unen, V. van; Manurung, M.D.; Stam, K.A.; Goeman, J.J.; Jochems, S.P.; Hollt, T.; Pezzotti, N.; Mouwenda, Y.D.; Ongwe, M.E.B.; Lorenz, F.R.; Kruize, Y.C.M.; Azimi, S.; Konig, M.H.; Vilanova, A.; Eisemann, E.; Lelieveldt, B.P.F.; Roestenberg, M.; Sim, B.K.L.; Reinders, M.J.T.; Fendel, R.; Hoffman, S.L.; Kremsner, P.G.; Koning, F.; Mordmuller, B.; Lell, B. & Yazdanbakhsh, M. (2021), Systems analysis and controlled malaria infection in Europeans and Africans elucidate naturally acquired immunity, Nature Immunology 22(5): 654-+.
- Ijsselsteijn, M.E.; Somarakis, A.; Lelieveldt, B.P.F.; Hollt, T. & Miranda, N.F.C.C. (2021), Semi-automated background removal limits data loss and normalizes imaging mass cytometry data, Cytometry Part A 99(12).
- Sokooti, H.; Yousefi, S.; Elmahdy, M.S.; Lelieveldt, B.P.F. & Staring, M. (2021), Hierarchical prediction of registration misalignment using a convolutional LSTM, IEEE Access 9: 62008-62020.
- Somarakis, A.; Ijsselsteijn, M.E.; Luk, S.J.; Kenkhuis, B.; Miranda, N.F.C.C. de; Lelieveldt, B.P.F. & Hollt, T. (2021), Visual cohort comparison for spatial single-cell omics-data, IEEE Transactions on Visualization and Computer Graphics 27(2): 733-743.
- Koolstra, K.; Bornert, P.; Lelieveldt, B.P.F.; Webb, A. & Dzyubachyk, O. (2021), Stochastic neighbor embedding as a tool for visualizing the encoding capability of magnetic resonance fingerprinting dictionaries, Magnetic Resonance Materials in Physics, Biology and Medicine 35.
- Bakken, T.E.; Jorstad, N.L.; Hu, Q.W.; Lake, B.B.; Tian, W.; Kalmbach, B.E.; Crow, M.; Hodge, R.D.; Krienen, F.M.; Sorensen, S.A.; Eggermont, J.; Yao, Z.Z.; Aevermann, B.D.; Aldridge, A.I.; Bartlett, A.; Bertagnolli, D.; Casper, T.; Castanon, R.G.; Crichton, K.; Daigle, T.L.; Dalley, R.; Dee, N.; Dembrow, N.; Diep, D.; Ding, S.L.; Dong, W.X.; Fang, R.X.; Fischer, S.; Goldman, M.; Goldy, J.; Graybuck, L.T.; Herb, B.R.; Hou, X.M.; Kancherla, J.; Kroll, M.; Lathia, K.; Lew, B. van; Li, Y.E.; Liu, C.E.S.; Liu, H.Q.; Lucero, J.D.; Mahurkar, A.; McMillen, D.; Miller, J.A.; Moussa, M.; Nery, J.R.; Nicovich, P.R.; Niu, S.Y.; Orvis, J.; Osteen, J.K.; Owen, S.; Palmer, C.R.; Pham, T.; Plongthongkum, N.; Poirion, O.; Reed, N.M.; Rimorin, C.; Rivkin, A.; Romanow, W.J.; Sedeno-Cortes, A.E.; Siletti, K.; Somasundaram, S.; Sulc, J.; Tieu, M.; Torkelson, A.; Tung, H.R.; Wang, X.N.; Xie, F.M.; Yanny, A.M.; Zhang, R.E.; Ament, S.A.; Behrens, M.M.; Bravo, H.C.; Chun, J.; Dobin, A.; Gillis, J.; Hertzano, R.; Hof, P.R.; Hollt, T.; Horwitz, G.D.; Keene, C.D.; Kharchenko, P.V.; Ko, A.L.; Lelieveldt, B.P.; Luo, C.Y.; Mukamel, E.A.; Pinto-Duarte, A.; Preissl, S.; Regev, A.; Ren, B.; Scheuermann, R.H.; Smith, K.; Spain, W.J.; White, O.R.; Koch, C.; Hawrylycz, M.; Tasic, B.; Macosko, E.Z.; McCarroll, S.A.; Ting, J.T.; Zeng, H.K.; Zhang, K.; Feng, G.P.; Ecker, J.R.; Linnarsson, S. & Lein, E.S. (2021), Comparative cellular analysis of motor cortex in human, marmoset and mouse, Nature 598(7879): 111-+.
- Aevermann, B.; Zhang, Y.; Novotny, M.; Keshk, M.; Bakken, T.; Miller, J.; Hodge, R.; Lelieveldt, B.; Lein, E. & Scheuermann, R.H. (2021), A machine learning method for the discovery of minimum marker gene combinations for cell type identification from single-cell RNA sequencing, Genome Research 31(10): 1767-1780.
- Somarakis, A.; Unen, V. van; Koning, F.; Lelieveldt, B. & Hollt, T. (2021), ImaCytE: visual exploration of cellular micro-environments for imaging mass cytometry data, IEEE Transactions on Visualization and Computer Graphics 27(1): 98-110.
- Lahnemann, D.; Koster, J.; Szczurek, E.; McCarthy, D.J.; Hicks, S.C.; Robinson, M.D.; Vallejos, C.A.; Campbell, K.R.; Beerenwinkel, N.; Mahfouz, A.; Pinello, L.; Skums, P.; Stamatakis, A.; Attolini, C.S.O.; Aparicio, S.; Baaijens, J.; Balvert, M.; Barbanson, B. de; Cappuccio, A.; Corleone, G.; Dutilh, B.E.; Florescu, M.; Guryev, V.; Holmer, R.; Jahn, K.; Lobo, T.J.; Keizer, E.M.; Khatri, I.; Kielbasa, S.M.; Korbel, J.O.; Kozlov, A.M.; Kuo, T.H.; Lelieveldt, B.P.F.; Mandoiu, I.I.; Marioni, J.C.; Marschall, T.; Molder, F.; Niknejad, A.; Raczkowski, L.; Reinders, M.; Ridder, J. de; Saliba, A.E.; Somarakis, A.; Stegle, O.; Theis, F.J.; Yang, H.; Zelikovsky, A.; McHardy, A.C.; Raphael, B.J.; Shah, S.R.P. & Schonhuth, A. (2020), Eleven grand challenges in single-cell data science, Genome Biology 21(1).
- Abdelaal, T.; Raadt, P. de; Lelieveldt, B.P.F.; Reinders, M.J.T. & Mahfouz, A. (2020), SCHNEL, Bioinformatics 36: I849-I856.
- Ruiter, K. de; Jochems, S.P.; Tahapary, D.L.; Stam, K.A.; Konig, M.; Unen, V. van; Laban, S.; Hollt, T.; Mbow, M.; Lelieveldt, B.P.F.; Koning, F.; Sartono, E.; Smit, J.W.A.; Supali, T. & Yazdanbakhsh, M. (2020), Helminth infections drive heterogeneity in human type 2 and regulatory cells, Science Translational Medicine 12(524).
- Pezzotti, N.; Thijssen, J.; Mordvintsev, A.; Hollt, T.; Lew, B. van; Lelieveldt, B.P.F.; Eisemann, E. & Vilanova, A. (2020), GPGPU linear complexity t-SNE optimization, IEEE Transactions on Visualization and Computer Graphics 26(1): 1172-1181.
- Suwandi, J.S.; Laban, S.; Vass, K.; Joosten, A.; Unen, V. van; Lelieveldt, B.P.F.; Hollt, T.; Zwaginga, J.J.; Nikplic, T. & Roep, B.O. (2020), Multidimensional analyses of proinsulin peptide-specific regulatory T cells induced by tolerogenic dendritic cells, Journal of Autoimmunity 107.
- Cao, Q.; Broersen, A.; Kitslaar, P.H.; Yuan, M.Y.; Lelieveldt, B.P.F. & Dijkstra, J. (2020), Automatic coronary artery plaque thickness comparison between baseline and follow-up CCTA images, Medical Physics 47(3).
- Vries, N.L. de; Unen, V. van; Ijsselsteijn, M.E.; Abdelaal, T.; Breggen, R. van der; Sarasqueta, A.F.; Mahfouz, A.; Peeters, K.C.M.J.; Hollt, T.; Lelieveldt, B.P.F.; Koning, F. & Miranda, N.F.C.C. de (2020), High-dimensional cytometric analysis of colorectal cancer reveals novel mediators of antitumour immunity, Gut 69(4): 691-703.
- Tao, Q.; Lelieveldt, B.P.F. & Geest, R.J. van der (2020), Deep learning for quantitative cardiac MRI, American Journal of Roentgenology 214(3): 529-535.
- Yuste, R.; Hawrylycz, M.; Aalling, N.; Aguilar-Valles, A.; Arendt, D.; Arnedillo, R.A.; Ascoli, G.A.; Bielza, C.; Bokharaie, V.; Bergmann, T.B.; Bystron, I.; Capogna, M.; Chang, Y.; Clemens, A.; Kock, C.P.J. de; DeFelipe, J.; Santos, S.E. dos; Dunville, K.; Feldmeyer, D.; Fiath, R.; Fishell, G.J.; Foggetti, A.; Gao, X.F.; Ghaderi, P.; Goriounova, N.A.; Gunturkun, O.; Hagihara, K.; Hall, V.J.; Helmstaedter, M.; Herculano, S.; Hilscher, M.M.; Hirase, H.; Hjerling-Leffler, J.; Hodge, R.; Huang, J.; Huda, R.; Khodosevich, K.; Kiehn, O.; Koch, H.; Kuebler, E.S.; Kuhnemund, M.; Larranaga, P.; Lelieveldt, B.; Louth, E.L.; Lui, J.H.; Mansvelder, H.D.; Marin, O.; Martinez-Trujillo, J.; Chameh, H.M.; Nath, A.; Nedergaard, M.; Nemec, P.; Ofer, N.; Pfisterer, U.G.; Pontes, S.; Redmond, W.; Rossier, J.; Sanes, J.R.; Scheuermann, R.; Serrano-Saiz, E.; Steiger, J.F.; Somogyi, P.; Tamas, G.; Tolias, A.S.; Tosches, M.A.; Garcia, M.T.; Vieira, H.M.; Wozny, C.; Wuttke, T.V.; Yong, L.; Yuan, J.; Zeng, H.K. & Lein, E. (2020), A community-based transcriptomics classification and nomenclature of neocortical cell types, Nature Neuroscience 23(12): 1456-1468.
- Pezzotti, N.; Yousefi, S.; Elmahdy, M.S.; Gemert, J.H.F. van; Schuelke, C.; Doneva, M.; Nielsen, T.; Kastryulin, S.; Lelieveldt, B.P.F.; Osch, M.J.P. van; Weerdt, E. de & Staring, M. (2020), An adaptive intelligence algorithm for under sampled knee MRI reconstruction, IEEE Access 8: 204825-204838.
- Keo, A.; Mahfouz, A.; Ingrassia, A.M.T.; Meneboo, J.P.; Villenet, C.; Mutez, E.; Comptdaer, T.; Lelieveldt, B.P.F.; Figeac, M.; Chartier-Harlin, M.C.; Berg, W.D.J. van de; Hilten, J.J. van & Reinders, M.J.T. (2020), Transcriptomic signatures of brain regional vulnerability to Parkinson's disease, Communications Biology 3(1).
- Li, N.; Unen, V. van; Abdelaal, T.; Guo, N.N.; Kasatskaya, S.A.; Ladell, K.; McLaren, J.E.; Egorov, E.S.; Izraelson, M.; Lopes, S.M.C.D.; Hollt, T.; Britanova, O.V.; Eggermont, J.; Miranda, N.F.C.C. de; Chudakov, D.M.; Price, D.A.; Lelieveldt, B.P.F. & Koning, F. (2019), Memory CD4(+) T cells are generated in the human fetal intestine, Nature Immunology 20(3): 301-+.
- (2019), Automatic Coronary Plaque Thickness Differences Calculation between Baseline and Follow-up CCTA Images, IEEE Transactions on Biomedical Engineering.
- Cao, Q.; Broersen, A.; Kitslaar, P.H.; Lelieveldt, B.P.F. & Dijkstra, J. (2019), A model-guided method for improving coronary artery tree extractions from CCTA images, International Journal of Computer Assisted Radiology and Surgery 14(2): 373-383.
- Sokooti, H.; Saygili, G.; Glocker, B.; Lelieveldt, B.P.F. & Staring, M. (2019), Quantitative error prediction of medical image registration using regression forests, Medical Image Analysis 56: 110-121.
- Shahzad, R.; Shankar, A.; Amier, R.; Nijveldt, R.; Westenberg, J.J.M.; Roos, A. de; Lelieveldt, B.P.F.; Geest, R.J. van der & Heart Brain Connection Study Grp (2019), Quantification of aortic pulse wave velocity from a population based cohort: a fully automatic method, Journal of Cardiovascular Magnetic Resonance 21.
- Unen, V. van; Li, N.; Abdelaal, T.; Ouboter, L.; Kooy-Winkelaar, Y.; Beyrend, G.; Hollt, T.; Mearin, L.; Lelieveldt, B.; Meulen-de Jong, A. van der & Koning, F. (2019), High-dimensional mass cytometry reveals the immune cell landscape in untreated inflammatory bowel disease, European Journal of Immunology 49: 1376-1376.
- Unen, V. van; Li, N.; Abdelaal, T.; Kooy-Winkelaar, Y.; Ouboter, L.; Beyrend, G.; Hollt, T.; Mearin, L.; Witte, A.; Escher, H.; Lelieveldt, B.; Meulen-de Jong, A. van der & Koning, F. (2019), High-dimensional mass cytometry reveals the immune cell landscape in inflammatory bowel disease, Journal of Crohn's and Colitis 13: S20-S20.
- Qiao, Y.C.; Lelieveldt, B.P.F. & Staring, M. (2019), An Efficient Preconditioner for Stochastic Gradient Descent Optimization of Image Registration, IEEE Transactions on Medical Imaging 38(10): 2314-2325.
- Hollt, T.; Vilanova, A.; Pezzotti, N.; Lelieveldt, B.P.F. & Hauser, H. (2019), Focus plus Context Exploration of Hierarchical Embeddings, Computer Graphics Forum 38(3): 569-579.
- Gao, X.P.; Boccalini, S.; Kitslaar, P.H.; Budde, R.P.J.; Tu, S.X.; Lelieveldt, B.P.F.; Dijkstra, J. & Reiber, J.H.C. (2019), A novel software tool for semi-automatic quantification of thoracic aorta dilatation on baseline and follow-up computed tomography angiography, International Journal of Cardiovascular Imaging 35(4): 711-723.
- Qiao, Y.C.; Jagt, T.; Hoogeman, M.; Lelieveldt, B.P.F. & Staring, M. (2019), Evaluation of an Open Source Registration Package for Automatic Contour Propagation in Online Adaptive Intensity-Modulated Proton Therapy of Prostate Cancer, Frontiers in Oncology 9.
- Hodge, R.D.; Bakken, T.E.; Miller, J.A.; Smith, K.A.; Barkan, E.R.; Graybuck, L.T.; Close, J.L.; Long, B.; Johansen, N.; Penn, O.; Yao, Z.Z.; Eggermont, J.; Hollt, T.; Levi, B.P.; Shehata, S.I.; Aevermann, B.; Beller, A.; Bertagnolli, D.; Brouner, K.; Casper, T.; Cobbs, C.; Dalley, R.; Dee, N.; Ding, S.L.; Ellenbogen, R.G.; Fong, O.; Garren, E.; Goldy, J.; Gwinn, R.P.; Hirschstein, D.; Keene, C.D.; Keshk, M.; Ko, A.L.; Lathia, K.; Mahfouz, A.; Maltzer, Z.; McGraw, M.; Nguyen, T.N.; Nyhus, J.; Ojemann, J.G.; Oldre, A.; Parry, S.; Reynolds, S.; Rimorin, C.; Shapovalova, N.V.; Somasundaram, S.; Szafer, A.; Thomsen, E.R.; Tieu, M.; Quon, G.; Scheuermann, R.H.; Yuste, R.; Sunkin, S.M.; Lelieveldt, B.; Feng, D.; Ng, L.; Bernard, A.; Hawrylycz, M.; Phillips, J.W.; Tasic, B.; Zeng, H.K.; Jones, A.R.; Koch, C. & Lein, E.S. (2019), Conserved cell types with divergent features in human versus mouse cortex, Nature 573(7772): 61-+.
- Abdelaal, T.; Hollt, T.; Unen, V. van; Lelieveldt, B.P.F.; Koning, F.; Reinders, M.J.T. & Mahfouz, A. (2019), CyTOFmerge: integrating mass cytometry data across multiple panels, Bioinformatics 35(20): 4063-4071.
- Li, N.; Unen, V. van; Guo, N.N.; Abdelaal, T.; Somarakis, A.; Eggermont, J.; Mahfouz, A.; Lopes, S.M.C.D.; Lelieveldt, B.P.F. & Koning, F. (2019), Early-Life Compartmentalization of Immune Cells in Human Fetal Tissues Revealed by High-Dimensional Mass Cytometry, Frontiers in Immunology 10.
- Li, N.; Unen, V. van; Guo, N.; Abdelaal, T.; Somarakis, A.; Eggermont, J.; Mahfouz, A.; Lopes, S.M.C.D.; Lelieveldt, B.P.F. & Koning, F. (2019), Early compartmentalization of immune cells in human fetal tissues revealed by high-dimensional mass cytometry, European Journal of Immunology 49: 1350-1351.
- Miranda, N.F. de; Vries, N.L. de; Unen, V. van; Abdelaal, T.; Ijsselsteijn, M.E.; Breggen, R. van der; Farina-Sarasqueta, A.; Peeters, K.C.M.J.; Hollt, T.; Lelieveldt, B.P.F. & Koning, F. (2019), Multidimensional cytometric analysis of colorectal cancer reveals novel and diverse mediators of antitumor immunity, Cancer Immunology Research 7(2).
- Aizenberg, E.; Roex, E.A.H.; Nieuwenhuis, W.P.; Mangnus, L.; Helm-van Mil, A.H.M. van der; Reijnierse, M.; Bloem, J.L.; Lelieveldt, B.P.F. & Stoel, B.C. (2019), Automatic quantification of bone marrow edema on MRI of the wrist in patients with early arthritis: A feasibility study (vol 79, pg 1127, 2018), Magnetic Resonance in Medicine 82(1): 510-510.
- Gao, X.P.; Boccalini, S.; Kitslaar, P.H.; Budde, R.P.J.; Tu, S.X.; Lelieveldt, B.P.F.; Dijkstra, J. & Reiber, J.H.C. (2019), A novel software tool for semi-automatic quantification of thoracic aorta dilatation on baseline and follow-up computed tomography angiography, International Journal of Cardiovascular Imaging 35(4): 711-723.
- Huisman S.M.H., Mahfouz A., Batmanghelich N.K., Lelieveldt B.P.F. & Reinders M.J.T. (2018), A structural equation model for imaging genetics using spatial transcriptomics, Brain Informatics 5: 13.
- Doorenweerd, N.; Mahfouz, A.; Putten, M. van; Kaliyaperumal, R.; t' Hoen, P.A.C.; Hendriksen, J.G.M.; Aartsma-Rus, A.M.; Verschuuren, J.J.G.M.; Niks, E.H.; Reinders, M.J.T.; Kan, H.E. & Lelieveldt, B.P.F. (2018), Timing and localization of human dystrophin isoform expression provide insights into the cognitive phenotype of Duchenne muscular dystrophy (vol 7, 12575, 2017), Scientific Reports 8.
- Doorenweerd, N.; Mahfouz, A.; Putten, M. van; Kaliyaperumal, R.; Hoen, P.A.C. 't; Hendriksen, J.G.M.; Aartsma-Rus, A.; Verschuuren, J.J.G.M.; Niks, E.H.; Reinders, M.J.T.; Kan, H.E. & Lelieveldt, B.P.F. (2018), Timing and localization of human dystrophin isoform expression provide insights into the cognitive phenotype of Duchenne muscular dystrophy, Neuromuscular Disorders 28: S10-S10.
- Pezzotti, N.; Fekete, J.D.; Hollt, T.; Lelieveldt, B.P.F.; Eisemann, E. & Vilanova, A. (2018), Multiscale Visualization and Exploration of Large Bipartite Graphs, Computer Graphics Forum 37(3): 549-560.
- Abdelmoula, W.M.; Pezzotti, N.; Holt, T.; Dijkstra, J.; Vilanova, A.; McDonnell, L.A. & Lelieveldt, B.P.F. (2018), Interactive Visual Exploration of 3D Mass Spectrometry Imaging Data Using Hierarchical Stochastic Neighbor Embedding Reveals Spatiomolecular Structures at Full Data Resolution, Journal of Proteome Research 17(3): 1054-1064.
- Pezzotti, N.; Hollt, T.; Gemert, J. van; Lelieveldt, B.P.F.; Eisemann, E. & Vilanova, A. (2018), DeepEyes: Progressive Visual Analytics for Designing Deep Neural Networks, IEEE Transactions on Visualization and Computer Graphics 24(1): 98-108.
- Pezzotti, N.; Fekete, J.D.; Hollt, T.; Lelieveldt, B.P.F.; Eisemann, E. & Vilanova, A. (2018), Multiscale Visualization and Exploration of Large Bipartite Graphs, Computer Graphics Forum 37(3): 549-560.
- Li, N.; Unen, V. van; Hollt, T.; Thompson, A.; Bergen, J. van; Pezzotti, N.; Eisemann, E.; Vilanova, A.; Lopes, S.M.C.D.; Lelieveldt, B.P.F. & Koning, F. (2018), Mass cytometry reveals innate lymphoid cell differentiation pathways in the human fetal intestine, Journal of Experimental Medicine 215(5): 1383-1396.
- Abdelmoula, W.M.; Pezzotti, N.; Holt, T.; Dijkstra, J.; Vilanova, A.; McDonnell, L.A. & Lelieveldt, B.P.F. (2018), Interactive Visual Exploration of 3D Mass Spectrometry Imaging Data Using Hierarchical Stochastic Neighbor Embedding Reveals Spatiomolecular Structures at Full Data Resolution, Journal of Proteome Research 17(3): 1054-1064.
- Sun, Z.; Qiao, Y.C.; Lelieveldt, B.P.F.; Staring, M. & Alzheimers Dis NeuroImaging Initia (2018), Integrating spatial-anatomical regularization and structure sparsity into SVM: Improving interpretation of Alzheimer's disease classification, NeuroImage 178: 445-460.
- Liu, S.; Dzyubachyk, O.; Eggermont, J.; Nakatani, S.; Lelieveldt, B.P.F. & Dijkstra, J. (2018), Histogram-based standardization of intravascular optical coherence tomography images acquired from different imaging systems, Medical Physics 45(9): 4158-4170.
- Laban, S.; Suwandi, J.S.; Unen, V. van; Pool, J.; Wesselius, J.; Hollt, T.; Pezzotti, N.; Vilanova, A.; Lelieveldt, B.P.F. & Roep, B.O. (2018), Heterogeneity of circulating CD8 T-cells specific to islet, neo-antigen and virus in patients with type 1 diabetes mellitus, PLoS ONE 13(8).
- Cao Qing, Broersen Alexander, Kitslaar Pieter H., Lelieveldt Boudewijn P. F. & Dijkstra Jouke (2018), A Quality Score for Coronary Artery Tree Extraction Results, Proceedings of SPIE 10575.
- Ji Yuanbo, van der Geest Rob J., Nazarian Saman, Lelieveldt Boudewijn P. F. & Tao Qian (2018), Advanced Two-Layer Level Set with a Soft Distance Constraint for Dual Surfaces Segmentation in Medical Images, Proceedings of SPIE 10574.
- Li, N.; Unen, V. van; Hollt, T.; Thompson, A.; Bergen, J. van; Pezzotti, N.; Eisemann, E.; Vilanova, A.; Lopes, S.M.C.D.; Lelieveldt, B.P.F. & Koning, F. (2018), Mass cytometry reveals innate lymphoid cell differentiation pathways in the human fetal intestine, Journal of Experimental Medicine 215(5).
- Aizenberg, E.; Roex, E.A.H.; Nieuwenhuis, W.P.; Mangnus, L.; Helm-van Mil, A.H.M. van der; Reijnierse, M.; Bloem, J.L.; Lelieveldt, B.P.F. & Stoel, B.C. (2018), Automatic quantification of bone marrow edema on MRI of the wrist in patients with early arthritis: A feasibility study, Magnetic Resonance in Medicine 79(2): 1127-1134.
- Hollt, T.; Pezzotti, N.; Unen, V. van; Koning, F.; Lelieveldt, B.P.F. & Vilanova, A. (2018), CyteGuide: Visual Guidance for Hierarchical Single-Cell Analysis, IEEE Transactions on Visualization and Computer Graphics 24(1): 739-748.
- Pezzotti, N.; Hollt, T.; Gemert, J. van; Lelieveldt, B.P.F.; Eisemann, E. & Vilanova, A. (2018), DeepEyes: Progressive Visual Analytics for Designing Deep Neural Networks, IEEE Transactions on Visualization and Computer Graphics 24(1): 98-108.
- Aizenberg, E.; Roex, E.A.H.; Nieuwenhuis, W.P.; Mangnus, L.; Helm-van Mil, A.H.M. van der; Reijnierse, M.; Bloem, J.L.; Lelieveldt, B.P.F. & Stoel, B.C. (2018), Automatic quantification of bone marrow edema on MRI of the wrist in patients with early arthritis: A feasibility study, Magnetic Resonance in Medicine 79(2): 1127-1134.
- Doorenweerd, N.; Mahfouz, A.; Putten, M. van; Kaliyaperumal, R.; t' Hoen, P.A.C.; Hendriksen, J.G.M.; Aartsma-Rus, A.M.; Verschuuren, J.J.G.M.; Niks, E.H.; Reinders, M.J.T.; Kan, H.E. & Lelieveldt, B.P.F. (2018), Author Correction, Scientific Reports 8.
- Dzyubachyk, O.; Staring, M.; Reijnierse, M.; Lelieveldt, B.P.F. & Geest, R.J. van der (2017), Inter-station intensity standardization for whole-body MR data, Magnetic Resonance in Medicine 77(1): 422-433.
- Ulman, V.; Maska, M.; Magnusson, K.E.G.; Ronneberger, O.; Haubold, C.; Harder, N.; Matula, P.; Matula, P.; Svoboda, D.; Radojevic, M.; Smal, I.; Rohr, K.; Jalden, J.; Blau, H.M.; Dzyubachyk, O.; Lelieveldt, B.; Xiao, P.D.; Li, Y.X.; Cho, S.Y.; Dufour, A.C.; Olivo-Marin, J.C.; Reyes-Aldasoro, C.C.; Solis-Lemus, J.A.; Bensch, R.; Brox, T.; Stegmaier, J.; Mikut, R.; Wolf, S.; Hamprecht, F.A.; Esteves, T.; Quelhas, P.; Demirel, O.; Malmstrom, L.; Jug, F.; Tomancak, P.; Meijering, E.; Munoz-Barrutia, A.; Kozubek, M. & Ortiz-de-Solorzano, C. (2017), An objective comparison of cell-tracking algorithms, Nature Methods 14(12): 1141-+.
- Pezzotti, N.; Lelieveldt, B.P.F.; Maaten, L. van der; Hollt, T.; Eisemann, E. & Vilanova, A. (2017), Approximated and User Steerable tSNE for Progressive Visual Analytics, IEEE Transactions on Visualization and Computer Graphics 23(7): 1739-1752.
- Cao, Q.; Broersen, A.; Graaf, M.A. de; Kitslaar, P.H.; Yang, G.Y.; Scholte, A.J.; Lelieveldt, B.P.F.; Reiber, J.H.C. & Dijkstra, J. (2017), Automatic identification of coronary tree anatomy in coronary computed tomography angiography, International Journal of Cardiovascular Imaging 33(11): 1809-1819.
- Huisman, S.M.H.; Lew, B. van; Mahfouz, A.; Pezzotti, N.; Hollt, T.; Michielsen, L.; Vilanova, A.; Reinders, M.J.T. & Lelieveldt, B.P.F. (2017), BrainScope: interactive visual exploration of the spatial and temporal human brain transcriptome, Nucleic Acids Research 45(10).
- Mahfouz, A.; Huisman, S.M.H.; Lelieveldt, B.P.F. & Reinders, M.J.T. (2017), Brain transcriptome atlases: a computational perspective, Brain Structure and Function 222(4): 1557-1580.
- Keo, A.; Aziz, N.A.; Dzyubachyk, O.; Grond, J. van der; Roon-Mom, W.M.C. van; Lelieveldt, B.P.F.; Reinders, M.J.T. & Mahfouz, A. (2017), Co-expression Patterns between ATN1 and ATXN2 Coincide with Brain Regions Affected in Huntington's Disease, Frontiers in Molecular Neuroscience 10.
- Aizenberg, E.; Berg, R. van den; Ez-Zaitouni, Z.; Heijde, D. van der; Reijnierse, M.; Dzyubachyk, O. & Lelieveldt, B.P.F. (2017), Computer-aided evaluation of inflammatory changes over time on MRI of the spine in patients with suspected axial spondyloarthritis: a feasibility study, BMC Medical Imaging 17.
- Shahzad, R.; Tao, Q.; Dzyubachyk, O.; Staring, M.; Lelieveldt, B.P.F. & Geest, R.J. van der (2017), Fully-automatic left ventricular segmentation from long-axis cardiac cine MR scans, Medical Image Analysis 39: 44-55.
- Mulder, I.A.; Khmelinskii, A.; Dzyubachyk, O.; Jong, S. de; Wermer, M.J.H.; Hoehn, M.; Lelieveldt, B.P.F. & Maagdenberg, A.M.J.M. van den (2017), MRI Mouse Brain Data of Ischemic Lesion after Transient Middle Cerebral Artery Occlusion, Frontiers in Neuroinformatics 11.
- Gao, X.P.; Boccalini, S.; Kitslaar, P.H.; Budde, R.P.J.; Attrach, M.; Tu, S.X.; Graaf, M.A. de; Ondrus, T.; Penicka, M.; Scholte, A.J.H.A.; Lelieveldt, B.P.F.; Dijkstra, J. & Reiber, J.H.C. (2017), Quantification of aortic annulus in computed tomography angiography: Validation of a fully automatic methodology, European Journal of Radiology 93: 1-8.
- Doorenweerd, N.; Mahfouz, A.; Putten, M. van; Kaliyaperumal, R.; t' Hoen, P.A.C.; Hendriksen, J.G.M.; Aartsma-Rus, A.M.; Verschuuren, J.J.G.M.; Niks, E.H.; Reinders, M.J.T.; Kan, H.E. & Lelieveldt, B.P.F. (2017), Timing and localization of human dystrophin isoform expression provide insights into the cognitive phenotype of Duchenne muscular dystrophy, Scientific Reports 7.
- Doorenweerd, N.; Mahfouz, A.; Putten, M. van; Kaliyaperumal, R.; t' Hoen, P.; Hendriksen, J.; Aartsma-Rus, A.; Verschuuren, J.; Niks, E.; Reinders, M.; Kan, H. & Lelieveldt, B. (2017), Timing and localization of human dystrophin isoform expression provide insights into the cognitive phenotype of Duchenne muscular dystrophy, Neuromuscular Disorders 27: S115-S115.
- Liu, S.N.; Sotomi, Y.; Eggermont, J.; Nakazawa, G.; Torii, S.; Ijichi, T.; Onuma, Y.; Serruys, P.W.; Lelieveldt, B.P.F. & Dijkstra, J. (2017), Tissue characterization with depth-resolved attenuation coefficient and backscatter term in intravascular optical coherence tomography images, Journal of Biomedical Optics 22(9).
- Manen, L. van; Stegehuis, P.L.; Farina-Sarasqueta, A.; Haan, L.M. de; Eggermont, J.; Bonsing, B.A.; Morreau, H.; Lelieveldt, B.P.F.; Velde, C.J.H. van de; Vahrmeijer, A.L.; Dijkstra, J. & Mieog, J.S.D. (2017), Validation of full-field optical coherence tomography in distinguishing malignant and benign tissue in resected pancreatic cancer specimens, PLoS ONE 12(4).
- Unen, V. van; Hollt, T.; Pezzotti, N.; Li, N.; Reinders, M.J.T.; Eisemann, E.; Koning, F.; Vilanova, A. & Lelieveldt, B.P.F. (2017), Visual analysis of mass cytometry data by hierarchical stochastic neighbour embedding reveals rare cell types, Nature Communications 8.
- Elbaz, M.S.M.; Geest, R.J. van der; Calkoen, E.E.; Roos, A. de; Lelieveldt, B.P.F.; Roest, A.A.W. & Westenberg, J.J.M. (2017), Assessment of viscous energy loss and the association with three-dimensional vortex ring formation in left ventricular inflow: In vivo evaluation using four-dimensional flow MRI, Magnetic Resonance in Medicine 77(2): 794-805.
- Sun, Z.; Giessen, M. van de; Lelieveldt, B.P.F.; Staring, M. & Alzheimers Dis NeuroImaging (2017), Detection of Conversion from Mild Cognitive Impairment to Alzheimer's Disease Using Longitudinal Brain MRI, Frontiers in Neuroinformatics 11.
- Stegehuis, P.L.; Boogerd, L.S.F.; Inderson, A.; Veenendaal, R.A.; Gerven, P. van; Bonsing, B.A.; Mieog, J.S.; Amelink, A.; Veselic, M.; Morreau, H.; Velde, C.J.H. van de; Lelieveldt, B.P.F.; Dijkstra, J.; Robinson, D.J. & Vahrmeijer, A.L. (2017), Toward optical guidance during endoscopic ultrasound-guided fine needle aspirations of pancreatic masses using single fiber reflectance spectroscopy: a feasibility study, Journal of Biomedical Optics 22(2).
- Mulder, I.A.; Khmelinskii, A.; Dzyubachyk, O.; Jong, S. de; Rieff, N.; Wermer, M.H.; Hoehn, M.; Lelieveldt, B.P.F. & Maagdenberg, A.M.J.M. van den (2017), Automated Ischemic Lesion Segmentation in MRI Mouse Brain Data after Transient Middle Cerebral Artery Occlusion, Frontiers in Neuroinformatics 11.
- Qiao, Y.C.; Lew, B. van; Lelieveldt, B.P.F. & Staring, M. (2016), Fast Automatic Step Size Estimation for Gradient Descent Optimization of Image Registration, IEEE Transactions on Medical Imaging 35(2): 391-403.
- Peters, I.T.A.; Stegehuis, P.L.; Peek, R.; Boer, F.L.; Zwet, E.W. van; Eggermont, J.; Westphal, J.R.; Kuppen, P.J.K.; Trimbos, J.B.; Hilders, C.G.J.M.; Lelieveldt, B.P.F.; Velde, C.J.H. van de; Bosse, T.; Dijkstra, J. & Vahrmeijer, A.L. (2016), Noninvasive Detection of Metastases and Follicle Density in Ovarian Tissue Using Full-Field Optical Coherence Tomography, Clinical Cancer Research 22(22): 5506-5513.
- Unen, V. van; Li, N.; Molendijk, I.; Temurhan, M.; Hollt, T.; Meulen-de Jong, A.E. van der; Verspaget, H.W.; Mearin, M.L.; Mulder, C.J.; Bergen, J. van; Lelieveldt, B.P.F. & Koning, F. (2016), Mass Cytometry of the Human Mucosal Immune System Identifies Tissue- and Disease-Associated Immune Subsets, Immunity 44(5): 1227-1239.
- Liu Shengnan, Eggermont Jeroen, Wolterbeek Ron, Lelieveldt Boudewijn P. F. & Dijkstra Jouke (2016), Influence of distance and incident angle on light intensities in intravascular optical coherence tomography pullback runs, Proceedings of SPIE 9689.
- Stegehuis Paulien L., Peters Inge T. A., Eggermont Jeroen, Kuppen Peter J. K., Trimbos J. Baptist, Lelieveldt Boudewijn P. F., van de Velde Cornelis J. H., Bosse Tjalling, Dijkstra Jouke & Vahrmeijer Alexander L. (2016), Improved selection of cortical ovarian strips for autotransplantation of ovarian tissue using full-field optical coherence tomography (FFOCT), Proceedings of SPIE 9689.
- Pezzotti, N.; Hollt, T.; Lelieveldt, B.; Eisemann, E. & Vilanova, A. (2016), Hierarchical Stochastic Neighbor Embedding, Computer Graphics Forum 35(3): 21-30.
- Mahfouz, A.; Lelieveldt, B.P.F.; Grefhorst, A.; Weert, L.T.C.M. van; Mol, I.M.; Sips, H.C.M.; Heuvel, J.K. van den; Datson, N.A.; Visser, J.A.; Reinders, M.J.T. & Meijer, O.C. (2016), Genome-wide coexpression of steroid receptors in the mouse brain: Identifying signaling pathways and functionally coordinated regions, Proceedings of the National Academy of Sciences 113(10): 2738-2743.
- Eising, E.; Huisman, S.M.H.; Mahfouz, A.; Vijfhuizen, L.S.; Anttila, V.; Winsvold, B.S.; Kurth, T.; Ikram, M.A.; Freilinger, T.; Kaprio, J.; Boomsma, D.I.; Duijn, C.M. van; Jarvelin, M.R.R.; Zwart, J.A.; Quaye, L.; Strachan, D.P.; Kubisch, C.; Dichgans, M.; Smith, G.D.; Stefansson, K.; Palotie, A.; Chasman, D.I.; Ferrari, M.D.; Terwindt, G.M.; Vries, B. de; Nyholt, D.R.; Lelieveldt, B.P.F.; Maagdenberg, A.M.J.M. van den & Reinders, M.J.T. (2016), Gene co-expression analysis identifies brain regions and cell types involved in migraine pathophysiology: a GWAS-based study using the Allen Human Brain Atlas, Human Genetics 135(4): 425-439.
- Kaila Gaurav, Kitslaar Pieter, Penicka Martin, Dijkstra Jouke & Lelieveldt Boudewijn (2016), Fusion of CTA and XA data using 3D centerline registration for plaque visualization during coronary intervention, Proceedings of SPIE 9786.
- Driel, P.B.A.A. van; Boonstra, M.C.; Prevoo, H.A.J.M.; Giessen, M.V. van de; Snoeks, T.J.A.; Tummers, Q.R.J.G.; Keereweer, S.; Cordfunke, R.A.; Fish, A.; Eendenburg, J.D.H. van; Lelieveldt, B.P.F.; Dijkstra, J.; Velde, C.J.H. van de; Kuppen, P.J.K.; Vahrmeijer, A.L.; Lowik, C.W.G.M. & Sier, C.F.M. (2016), EpCAM as multi-tumour target for near-infrared fluorescence guided surgery, BMC Cancer 16.
- Abdelmoula, W.M.; Balluff, B.; Englert, S.; Dijkstra, J.; Reinders, M.J.T.; Walch, A.; McDonnell, L.A. & Lelieveldt, B.P.F. (2016), Data-driven identification of prognostic tumor subpopulations using spatially mapped t-SNE of mass spectrometry imaging data, Proceedings of the National Academy of Sciences 113(43): 12244-12249.
- Hollt, T.; Pezzotti, N.; Unen, V. van; Koning, F.; Eisemann, E.; Lelieveldt, B. & Vilanova, A. (2016), Cytosplore: Interactive Immune Cell Phenotyping for Large Single-Cell Datasets, Computer Graphics Forum 35(3): 171-180.
- Liu, S.N.; Eggermont, J.; Wolterbeek, R.; Broersen, A.; Busk, C.A.G.R.; Precht, H.; Lelieveldt, B.P.F. & Dijkstra, J. (2016), Analysis and compensation for the effect of the catheter position on image intensities in intravascular optical coherence tomography, Journal of Biomedical Optics 21(12).
- Hammelrath, L.; Skokic, S.; Khmelinskii, A.; Hess, A.; Knaap, N. van der; Staring, M.; Lelieveldt, B.P.F.; Wiedermann, D. & Hoehn, M. (2016), Morphological maturation of the mouse brain: An in vivo MRI and histology investigation, NeuroImage 125: 144-152.
- Driel, P.B.A.A. van; Giessen, M. van de; Boonstra, M.C.; Snoeks, T.J.A.; Keereweer, S.; Oliveira, S.; Velde, C.J.H. van de; Lelieveldt, B.P.F.; Vahrmeijer, A.L.; Lowik, C.W.G.M. & Dijkstra, J. (2015), Characterization and Evaluation of the Artemis Camera for Fluorescence-Guided Cancer Surgery, Molecular Imaging and Biology 17(3): 413-423.
- Stegehuis Paulien L., Boonstra Martin C., de Rooij Karien E., Powolny Francois E., Sinisi Riccardo, Homulle Harald, Bruschini Claudio, Charbon Edoardo, van de Velde Cornelis J. H., Lelieveldt Boudewijn P. F., Vahrmeijer Alexander L., Dijkstra Jouke & van de Giessen Martijn (2015), Fluorescence lifetime imaging to differentiate bound from unbound ICG-cRGD both in vitro and in vivo, Proceedings of SPIE 9313.
- Schaafsma, B.E.; Giessen, M.V. de; Charehbili, A.; Smit, V.T.H.B.M.; Kroep, J.R.; Lelieveldt, B.P.F.; Liefers, G.J.; Chan, A.; Lowik, W.G.M.; Dijkstra, J.; Velde, C.J.H.V. de; Wasser, M.N.J.M. & Vahrmeijer, A.L. (2015), Optical Mammography Using Diffuse Optical Spectroscopy for Monitoring Tumor Response to Neoadjuvant Chemotherapy in Women with Locally Advanced Breast Cancer, Clinical Cancer Research 21(3): 577-584.
- Baka, N.; Lelieveldt, B.P.F.; Schultz, C.; Niessen, W. & Walsum, T. van (2015), Respiratory motion estimation in x-ray angiography for improved guidance during coronary interventions, Physics in Medicine and Biology 60(9): 3617-3637.
- Mahfouz, A.; Giessen, M. van de; Maaten, L. van der; Huisman, S.; Reinders, M.; Hawrylycz, M.J. & Lelieveldt, B.P.F. (2015), Visualizing the spatial gene expression organization in the brain through non-linear similarity embeddings, Methods 73: 79-89.
- van de Giessen Martijn, Schaafsma Boudewijn E., Charehbili Ayoub, Smit Vincent T. H. B. M., Kroep Judith R., Lelieveldt Boudewijn P. F., Liefers Gerrit-Jan, Chan Alan, Lowik Clemens W. G. M., Dijkstra Jouke, van de Velde Cornelis J. H., Wasser Martin N. J. M. & Vahrmeijer Alexander L. (2015), Early identification of non-responding locally advanced breast tumors receiving neoadjuvant chemotherapy, Proceedings of SPIE 9303.
- Sun Zhuo, Lelieveldt Boudewijn P. F. & Staring Marius (2015), FAST LINEAR GEODESIC SHAPE REGRESSION USING COUPLED LOGDEMONS REGISTRATION, Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging: 1276-1279.
- Gao Xinpei, Kitslaar Pieter H., Scholte Arthur J. H. A., Lelieveldt Boudewijn P. F., Dijkstra Jouke & Reiber Johan H. C. (2015), Automatic aortic root segmentation in CTA whole-body dataset, Proceedings of SPIE 9785.
- Qiao Yuchuan, Sun Zhuo, Lelieveldt Boudewijn P. F. & Staring Marius (2015), A Stochastic Quasi-Newton Method for Non-Rigid Image Registration, Lecture Notes in Artificial Intelligence 9350: 297-304.
- Shahzad, R.; Dzyubachyk, O.; Staring, M.; Kullberg, J.; Johansson, L.; Ahlstrom, H.; Lelieveldt, B.P.F. & Geest, R.J. van der (2015), Automated extraction and labelling of the arterial tree from whole-body MRA data, Medical Image Analysis 24(1): 28-40.
- Sun Zhuo, Fan Yong, Lelieveldt Boudewijn P. F. & van de Giessen Martijn (2015), Detection of Alzheimer's Disease using Group Lasso SVM-based Region Selection, Proceedings of SPIE 9414.
- Gao Shan, van't Klooster Ronald, van Wijk Diederik F., Nederveen Aart J., Lelieveldt Boudewijn P. F. & van der Geest Rob J. (2015), Evaluating intensity normalization for multispectral classification of carotid atherosclerotic plaque, Proceedings of SPIE 9413.
- Babaei, S.; Mahfouz, A.; Hulsman, M.; Lelieveldt, B.P.F.; Ridder, J. de & Reinders, M. (2015), Hi-C Chromatin Interaction Networks Predict Co-expression in the Mouse Cortex, PLoS Computational Biology 11(5).
- Elbaz Mohammed S. M., Lelieveldt Boudewijn P. F. & van der Geest Rob J. (2015), Hierarchical Shape Distributions for Automatic Identification of 3D Diastolic Vortex Rings from 4D Flow MRI, Lecture Notes in Artificial Intelligence 9350: 467-475.
- van Lew Baldur, Botha Char P., Milles Julien R., Vrooman Henri A., van de Giessen Martijn & Lelieveldt Boudewijn P. F. (2015), Interactive analysis of geographically distributed population imaging data collections over light-path data networks, Proceedings of SPIE 9418.
- van de Giessen Martijn, Janssen Jasper P., Brouwer Patrick A., Reiber Johan H. C., Lelieveldt Boudewijn P. F. & Dijkstra Jouke (2015), Probabilistic atlas based labeling of the cerebral vessel tree, Proceedings of SPIE 9413.
- Gao, S.; van't Klooster, R.; Wijk, D.F. van; Nederveen, A.J.; Lelieveldt, B.P.F. & Geest, R.J. van der (2015), Repeatability of in vivo quantification of atherosclerotic carotid artery plaque components by supervised multispectral classification, Magnetic Resonance Materials in Physics, Biology and Medicine 28(6): 535-545.
- Kitslaar Pieter H., van 't Klooster Ronald, Staring Marius, Lelieveldt Boudewijn P. F. & van der Geest Rob J. (2015), Segmentation of Branching Vascular Structures using Adaptive Subdivision Surface Fitting, Proceedings of SPIE 9413.
- Mahfouz, A.; Ziats, M.N.; Rennert, O.M.; Lelieveldt, B.P.F. & Reinders, M.J.T. (2015), Shared Pathways Among Autism Candidate Genes Determined by Co-expression Network Analysis of the Developing Human Brain Transcriptome, Journal of Molecular Neuroscience 57(4): 580-594.
- Dzyubachyk, O.; Tao, Q.; Poot, D.H.J.; Lamb, H.J.; Zeppenfeld, K.; Lelieveldt, B.P.F. & Geest, R.J. van der (2015), Super-resolution reconstruction of late gadolinium-enhanced MRI for improved myocardial scar assessment, Journal of Magnetic Resonance Imaging 42(1): 160-167.
- Mengler, L.; Khmelinskii, A.; Diedenhofen, M.; Po, C.; Staring, M.; Lelieveldt, B.P.P. & Hoehn, M. (2014), Brain maturation of the adolescent rat cortex and striatum: Changes in volume and myelination, NeuroImage 84: 35-44.
- Lelieveldt Boudewijn (2014), Image Analysis Challenges in Translational Molecular Imaging Research.
- Kirisli, H.A.; Gupta, V.; Shahzad, R.; Younis, I. al; Dharampal, A.; Geuns, R.J. van; Scholte, A.J.; Graaf, M.A. de; Joemai, R.M.S.; Nieman, K.; Vliet, L. van; Walsum, T. van; Lelieveldt, B. & Niessen, W.J. (2014), Additional Diagnostic Value of Integrated Analysis of Cardiac CTA and SPECT MPI Using the SMARTVis System in Patients with Suspected Coronary Artery Disease, Journal of Nuclear Medicine 55(1): 50-57.
- Abdelmoula, W.M.; Skraskova, K.; Balluff, B.; Carreira, R.J.; Tolner, E.A.; Lelieveldt, B.P.F.; Maaten, L. van der; Morreau, H.; Maagdenberg, A.M.J.M. van den; Heeren, R.M.A.; McDonnell, L.A. & Dijkstra, J. (2014), Automatic Generic Registration of Mass Spectrometry Imaging Data to Histology Using Nonlinear Stochastic Embedding, Analytical Chemistry 86(18): 9204-9211.
- Abdelmoula, W.M.; Carreira, R.J.; Shyti, R.; Balluff, B.; Zeijl, R.J.M. van; Tolner, E.A.; Lelieveldt, B.F.P.; Maagdenberg, A.M.J.M. van den; McDonnell, L.A. & Dijkstra, J. (2014), Automatic Registration of Mass Spectrometry Imaging Data Sets to the Allen Brain Atlas, Analytical Chemistry 86(8): 3947-3954.
- Baka, N.; Kaptein, B.L.; Giphart, J.E.; Staring, M.; Bruijne, M. de; Lelieveldt, B.P.F. & Valstar, E. (2014), Evaluation of automated statistical shape model based knee kinematics from biplane fluoroscopy, Journal of Biomechanics 47(1): 122-129.
- Qiao Y., Lelieveldt B. P. F. & Staring M. (2014), Fast automatic estimation of the optimization step size for nonrigid image registration, Proceedings of SPIE 9034.
- Elbaz, M.S.M.; Calkoen, E.E.; Westenberg, J.J.M.; Lelieveldt, B.P.F.; Roest, A.A.W. & Geest, R.J. van der (2014), Vortex flow during early and late left ventricular filling in normal subjects: quantitative characterization using retrospectively-gated 4D flow cardiovascular magnetic resonance and three-dimensional vortex core analysis, Journal of Cardiovascular Magnetic Resonance 16.
- Shamonin, D.P.; Bron, E.E.; Lelieveldt, B.P.F.; Smits, M.; Klein, S.; Staring, M. & Alzheimer's Dis Neuroimaging In (2014), Fast parallel image registration on CPU and GPU for diagnostic classification of Alzheimer's disease, Frontiers in Neuroinformatics 7.
- Dzyubachyk, O.; Khmelinskii, A.; Plenge, E.; Kok, P.; Snoeks, T.J.A.; Poot, D.H.J.; Lowik, C.W.G.M.; Botha, C.P.; Niessen, W.J.; Weerd, L. van der; Meijering, E. & Lelieveldt, B.P.F. (2014), Interactive Local Super-Resolution Reconstruction of Whole-Body MRI Mouse Data: A Pilot Study with Applications to Bone and Kidney Metastases, PLoS ONE 9(9).
- Abdelmoula Walid M., Carreira Ricardo J., Shyti Reinald, Balluff Benjamin, Tolner Else, van den Maagdenberg Arn M. J. M., Lelieveldt B. P. F., McDonnell Liam & Dijkstra Jouke (2014), Automatic registration of imaging mass spectrometry data to the Allen Brain Atlas transcriptome, Proceedings of SPIE 9034.
- Graaf, M.A. de; Broersen, A.; Kitslaar, P.H.; Roos, C.J.; Dijkstra, J.; Lelieveldt, B.P.F.; Jukema, J.W.; Schalij, M.J.; Delgado, V.; Bax, J.J.; Reiber, J.H.C. & Scholte, A.J. (2013), Automatic quantification and characterization of coronary atherosclerosis with computed tomography coronary angiography: cross-correlation with intravascular ultrasound virtual histology, International Journal of Cardiovascular Imaging 29(5): 1177-1190.
- Khmelinskii A., Mengler L., Kitslaar P., Staring M., Hoehn M. & Lelieveldt B. P. F. (2013), A visualization platform for high-throughput, follow-up, co-registered multi-contrast MRI rat brain data, MEDICAL IMAGING 2013: BIOMEDICAL APPLICATIONS IN MOLECULAR, STRUCTURAL, AND FUNCTIONAL IMAGING 8672.
- Dzyubachyk, O.; Blaas, J.; Botha, C.P.; Staring, M.; Reijnierse, M.; Bloem, J.L.; Geest, R.J. van der & Lelieveldt, B.P.F. (2013), Comparative exploration of whole-body MR through locally rigid transforms.
- Baka, N.; Metz, C.T.; Schultz, C.; Neefjes, L.; Geuns, R.J. van; Lelieveldt, B.P.F.; Niessen, W.J.; Walsum, T. van & Bruijne, M. de (2013), Statistical coronary motion models for 2D+t/3D registration of X-ray coronary angiography and CTA, Medical Image Analysis 17(6): 698-709.
- Dzyubachyk, O.; Lelieveldt, B.P.F.; Blaas, J.; Reijnierse, M.; Webb, A. & Geest, R.J. van der (2013), Automated algorithm for reconstruction of the complete spine from multistation 7T MR data, Magnetic Resonance in Medicine 69(6): 1777-1786.
- Dzyubachyk Oleh, Tao Qian, Poot Dirk H. J., Lamb Hildo, Zeppenfeld Katja, Lelieveldt Boudewijn P. F. & van der Geest Rob J. (2013), Improved Myocardial Scar Characterization by Super-Resolution Reconstruction in Late Gadolinium Enhanced MRI, Lecture Notes in Artificial Intelligence 8151: 147-154.
- Dzyubachyk Oleh, van der Geest Rob J., Staring Marius, Boernert Peter, Reijnierse Monique, Bloem Johan L. & Lelieveldt Boudewijn P. F. (2013), Joint Intensity Inhomogeneity Correction for Whole-Body MR Data, Lecture Notes in Artificial Intelligence 8149: 106-113.
- van'T Klooster, R.; Staring, M.; Klein, S.; Kwee, R.M.; Kooi, M.E.; Reiber, J.H.C.; Lelieveldt, B.P.F. & Geest, R.J. van der (2013), Automated registration of multispectral MR vessel wall images of the carotid artery, Medical Physics 40(12).
- van Lew Baldur, Lelieveldt Boudewijn, van Buchem Mark A., Reiber Johan H. C. & Milles Julien (2013), Deformation texture-based features for classification in Alzheimer's disease, Proceedings of SPIE 8669.
- van de Giessen Martijn, Tao Qian, van der Geest Rob J. & Lelieveldt Boudewijn P. F. (2013), MODEL-BASED ALIGNMENT OF LOOK-LOCKER MRI SEQUENCES FOR CALIBRATED MYOCARDICAL SCAR TISSUE QUANTIFICATION, Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging: 1038-1041.
- Baiker, M.; Snoeks, T.J.A.; Kaijzel, E.L.; Que, I.; Dijkstra, J.; Lelieveldt, B.P.F. & Lowik, C.W.G.M. (2012), Automated Bone Volume and Thickness Measurements in Small Animal Whole-Body MicroCT Data, Molecular Imaging and Biology 14(4): 420-430.
- Groen, H.C.; Khmelinskii, A.; Berndsen, S.C.; Lelieveldt, B.P.F. & Jong, M. de (2012), Comparison of manual and automatic quantification of bone 99mTc-HDP SPECT/CT mouse scan, European Journal of Nuclear Medicine and Molecular Imaging 39: S290-S290.
- Khmelinskii, A.; Groen, H.C.; Baiker, M.; Jong, M. de & Lelieveldt, B.P.F. (2012), Segmentation and Visual Analysis of Whole-Body Mouse Skeleton microSPECT, PLoS ONE 7(11): -.
- Gupta, V.; Kirisli, H.A.; Hendriks, E.A.; Geest, R.J. van der; Giessen, M. van de; Niessen, W.; Reiber, J.H.C. & Lelieveldt, B.P.F. (2012), Cardiac MR perfusion image processing techniques: A survey, Medical Image Analysis 16(4): 767-785.
- Khmelinskii A., Plenge E., Kok P., Dzyubachyk O., Poot D. H. J., Suidgeest E., Botha C. P., Niessen W. J., van der Weerd L., Meijering E. & Lelieveldt B. P. F. (2012), SUPER-RESOLUTION RECONSTRUCTION OF WHOLE-BODY MRI MOUSE DATA: AN INTERACTIVE APPROACH, 2012 9TH IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING (ISBI): 1723-1726.
- Metz, C.T.; Baka, N.; Kirisli, H.; Schaap, M.; Klein, S.; Neefjes, L.A.; Mollet, N.R.; Lelieveldt, B.; Bruijne, M. de; Niessen, W.J. & Walsum, T. van (2012), Regression-Based Cardiac Motion Prediction From Single-Phase CTA, IEEE Transactions on Medical Imaging 31(6): 1311-1325.
- Gupta, V.; Kirisli, H.A.; Hendriks, E.A.; Geest, R.J. van der; Giessen, M. van de; Niessen, W.; Reiber, J.H.C. & Lelieveldt, B.P.F. (2012), Cardiac MR perfusion image processing techniques: A survey., Medical Image Analysis.
- Groen, H.C.; Khmelinskii, A.; Jong, M. de & Lelieveldt, B.P.F. (2012), Segmentation of Whole-Body microSPECT Mouse Skeleton Scans, European Journal of Nuclear Medicine and Molecular Imaging 39: S290-S290.
- Kirisli, H.A.; Gupta, V.; Kirschbaum, S.W.; Rossi, A.; Metz, C.T.; Schaap, M.; Geuns, R.J. van; Mollet, N.; Lelieveldt, B.P.F.; Reiber, J.H.C.; Walsum, T. van & Niessen, W.J. (2012), Comprehensive visualization of multimodal cardiac imaging data for assessment of coronary artery disease: first clinical results of the SMARTVis tool, International Journal of Computer Assisted Radiology and Surgery 7(4): 557-571.
- Giessen, M. van de; Laan, A. van der; Hendriks, E.A.; Vidorreta, M.; Reiber, J.H.C.; Jost, C.R.; Tanke, H.J. & Lelieveldt, B.P.F. (2012), Fully Automated Attenuation Measurement and Motion Correction in FLIP Image Sequences, IEEE Transactions on Medical Imaging 31(2): 461-473.
- Baka, N.; Bruijne, M. de; Walsum, T. van; Kaptein, B.L.; Giphart, J.E.; Schaap, M.; Niessen, W.J. & Lelieveldt, B.P.F. (2012), Statistical Shape Model-Based Femur Kinematics From Biplane Fluoroscopy, IEEE Transactions on Medical Imaging 31(8): 1573-1583.
- Khmelinskii, A.; Baiker, M.; Kaijzel, E.L.; Chen, J.; Reiber, J.H.C. & Lelieveldt, B.P.F. (2011), Articulated Whole-Body Atlases for Small Animal Image Analysis: Construction and Applications, Molecular Imaging and Biology 13(5): 898-910.
- Baka, N.; Kaptein, B.L.; Bruijne, M. de; Walsum, T. van; Giphart, J.E.; Niessen, W.J. & Lelieveldt, B.P.F. (2011), 2D-3D shape reconstruction of the distal femur from stereo X-ray imaging using statistical shape models., Medical Image Analysis 15(6): 840-50.
- Baiker, M.; Snoeks, T.J.A.; Kaijzel, E.L.; Que, I.; Dijkstra, J.; Lelieveldt, B.P.F. & Lowik, C.W.G.M. (2011), Automated Bone Volume and Thickness Measurements in Small Animal Whole-Body MicroCT Data.
- Baiker M, Staring M, Löwik CW, Reiber JH & Lelieveldt BP (2011), Automated registration of whole-body follow-up MicroCT data of mice., Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention 14(Pt 2): 516-23.
- Snoeks, T.J.A.; Khmelinskii, A.; Que, I.; Lelieveldt, B.; Kaijzel, E.L. & Lowik, C.W.G.M. (2011), A method to follow tumor growth and tumor induced bone loss simultaneously over time, in vivo, using whole body bioluminescence fluorescence imaging, BONE 48(1): S49-S50.
- Lelieveldt BPF, Botha CP, Kaijzel EL, Hendriks EA, Reiber JHC, Lowik CWGM & Dijkstra J (2011), TOWARDS INTEGRATED ANALYSIS OF LONGITUDINAL WHOLE-BODY SMALL ANIMAL IMAGING STUDIES, 2011 IEEE INTERNATIONAL CONFERENCE ON ACOUSTICS, SPEECH, AND SIGNAL PROCESSING: 5768-5771.
- Snoeks, T.J.A.; Khmelinskii, A.; Lelieveldt, B.P.F.; Kaijzel, E.L. & Lowik, C.W.G.M. (2011), Optical advances in skeletal imaging applied to bone metastases, BONE 48(1): 106-114.
- Suinesiaputra A, Frangi AF, Kaandorp TAM, Lamb HJ, Bax JJ, Reiber JHC & Lelieveldt BPF (2011), Slice-Based Combination of Rest and Dobutamine-Stress Cardiac MRI Using a Statistical Motion Model to Identify Myocardial Infarction: Validation against Contrast-Enhanced MRI, FUNCTIONAL IMAGING AND MODELING OF THE HEART 6666: 267-274.
- Suinesiaputra, A.; Frangi, A.F.; Kaandorp, T.A.M.; Lamb, H.J.; Bax, J.J.; Reiber, J.H.C. & Lelieveldt, B.P.F. (2011), Automated Regional Wall Motion Abnormality Detection by Combining Rest and Stress Cardiac MRI: Correlation With Contrast-Enhanced MRI, Journal of Magnetic Resonance Imaging 34(2): 270-278.
- Snoeks, T.J.A.; Khmelinskii, A.; Lelieveldt, B.P.F.; Kaijzel, E.L. & Lowik, C.W.G.M. (2011), Optical advances in skeletal imaging applied to bone metastases., BONE 48(1): 106-14.
- Baka, N.; Kaptein, B.L.; Bruijne, M. de; Walsum, T. van; Giphart, J.E.; Niessen, W.J. & Lelieveldt, B.P.F. (2011), 2D-3D shape reconstruction of the distal femur from stereo X-ray imaging using statistical shape models, Medical Image Analysis 15(6): 840-850.
- Baiker M, Staring M, Lowik CWGM, Reiber JHC & Lelieveldt BPF (2011), Automated Registration of Whole-Body Follow-Up MicroCT Data of Mice, MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION (MICCAI 2011), PT II 6892: 516-523.
- Baka N, Niessen WJ, Kaptein BL, van Walsum T, Ferrarini L, Reiber JHC & Lelieveldt BPF (2010), Correspondence free 3D statistical shape model fitting to sparse X-ray projections, MEDICAL IMAGING 2010: IMAGE PROCESSING 7623: -.
- Kok, P.; Baiker, M.; Hendriks, E.A.; Post, F.H.; Dijkstra, J.; Lowik, C.W.G.M.; Lelieveldt, B.P.F. & Botha, C.P. (2010), Articulated Planar Reformation for Change Visualization in Small Animal Imaging, IEEE Transactions on Visualization and Computer Graphics 16(6): 1396-1404.
- Baiker, M.; Milles, J.; Dijkstra, J.; Henning, T.D.; Weber, A.W.; Que, I.; Kaijzel, E.L.; Lowik, C.W.G.M.; Reiber, J.H.C. & Lelieveldt, B.P.F. (2010), Atlas-based whole-body segmentation of mice from low-contrast Micro-CT data, Medical Image Analysis 14(6): 723-737.
- Khmelinskii, A.; Baiker, M.; Kaijzel, E.L.; Chen, J.; Reiber, J.H.C. & Lelieveldt, B.P.F. (2010), Articulated Whole-Body Atlases for Small Animal Image Analysis: Construction and Applications.
- Gupta, V.; Hendriks, E.A.; Milles, J.; Geest, R.J. van der; Jerosch-Herold, M.; Reiber, J.H.C. & Lelieveldt, B.P.F. (2010), Fully Automatic Registration and Segmentation of First-Pass Myocardial Perfusion MR Image Sequences, Academic Radiology 17(11): 1375-1385.
- Khmelinskii A, Baiker M, Chen XJ, Reiber JHC, Henkelman RM & Lelieveldt BPF (2010), ATLAS-BASED ORGAN & BONE APPROXIMATION FOR EX-VIVO mu MRI MOUSE DATA: A PILOT STUDY, 2010 7TH IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING: FROM NANO TO MACRO: 1197-1200.
- Ma, M.; Stralen, M. van; Reiber, J.H.C.; Bosch, J.G. & Lelieveldt, B.P.F. (2010), Model driven quantification of left ventricular function from sparse single-beat 3D echocardiography, Medical Image Analysis 14(4): 582-593.
- Suinesiaputra A, Frangi AF, Kaandorp TAM, Lamb HJ, Bax JJ, Reiber JHC & Lelieveldt BPF (2009), Automated Detection of Regional Wall Motion Abnormalities Based on a Statistical Model Applied to Multislice Short-Axis Cardiac MR Images, IEEE Transactions on Medical Imaging 28(4): 595-607.
- (2009), Left Ventricle Segmentation from Contrast Enhanced Fast Rotating Ultrasound Images Using Three Dimensional Active Shape Models.
- (2009), IDENTIFICATION OF CELLULAR DYNAMIC PATTERNS RESULTING FROM REPETITIVE PHOTOBLEACHING USING INDEPENDENT COMPONENT ANALYSIS.
- Oost E, Oemrawsingh P, Reiber JH & Lelieveldt B (2009), Automated left ventricular delineation in X-ray angiograms: a validation study., Catheterization and Cardiovascular Interventions 73(2): 231-40.
- Suinesiaputra A, Frangi AF, Kaandorp TA, Lamb HJ, Bax JJ, Reiber JH & Lelieveldt BP (2009), Automated detection of regional wall motion abnormalities based on a statistical model applied to multislice short-axis cardiac MR images., IEEE Transactions on Medical Imaging 28(4): 595-607.
- Ma M, van Stralen M, Reiber JHC, Bosch JG & Lelieveldt BPF (2009), Left Ventricle Segmentation from Contrast Enhanced Fast Rotating Ultrasound Images Using Three Dimensional Active Shape Models, FUNCTIONAL IMAGING AND MODELING OF THE HEART, PROCEEDINGS 5528: 295-302.
- (2009), 2D/3D REGISTRATION OF MICRO-CT DATA TO MULTI-VIEW PHOTOGRAPHS BASED ON A 3D DISTANCE MAP.
- van Gemert AMC, Jost CR, van der Laan AMA, Dirks RW, Reiber JHC, Tanke HJ & Lelieveldt BPF (2009), IDENTIFICATION OF CELLULAR DYNAMIC PATTERNS RESULTING FROM REPETITIVE PHOTOBLEACHING USING INDEPENDENT COMPONENT ANALYSIS, 2009 IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING: FROM NANO TO MACRO, VOLS 1 AND 2: 1382-1385.
- Milles J, van der Geest RJ, Jerosch-Herold M, Reiber JHC & Lelieveldt BPF (2008), Fully Automated Motion Correction in First-Pass Myocardial Perfusion MR Image Sequences, IEEE Transactions on Medical Imaging 27(11).
- Lelieveldt BPF & He B (2008), Functional Imaging of the Heart, IEEE Transactions on Medical Imaging 27(11).
- Baka N, Milles J, Hendriks EA, Suinesiaputra A, Herold MJ, Reiber JHC & Lelieveldt BF (2008), Segmentation of myocardial perfusion MR sequences with multi-band Active Appearance Models driven by spatial and temporal features - art. no. 691415, MEDICAL IMAGING 2008: IMAGE PROCESSING, PTS 1-3 6914: 91415-91415.
- Lelieveldt BPF & Karssemeijer N (2008), Information Processing in Medical Imaging 2007, Medical Image Analysis 12(6): 729-730.
- Baiker M, Dijstra J, Que I, Lowik CWGM, Reiber JHC & Lelieveldt BPF (2008), Organ approximation in mu CT data with low soft tissue contrast using an articulated whole-body atlas, 2008 IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING: FROM NANO TO MACRO, VOLS 1-4: 1267-1270.
- van Assen HC, Danilouchkine MG, Dirksen MS, Reiber JHC & Lelieveldt BPF (2008), A 3-D active shape model driven by fuzzy inference: Application to cardiac CT and MR, IEEE Transactions on Information Technology in Biomedicine 12(5).
- Baiker M, Milles J, Vossepoell AM, Que I, Kaijzel EL, Lowik CWGM, Reiber JHC, Dykstra J & Lelieveldt BPF (2007), Fully automated whole-body registration in mice using an articulated skeleton atlas, 2007 4TH IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING : MACRO TO NANO, VOLS 1-3: 728-731.
- Ma M, Bosch JG, Reiber JHC & Lelieveldt BPF (2007), Fully automatic estimation of object pose for segmentation initialization: Application to cardiac MR and echocardiography images - art. no. 65123J, Medical Imaging 2007: Image Processing, Pts 1-3 6512: J5123-J5123.
- Angelie E, Oost ER, Hendriksen D, Lelieveldt BPF, Van der Geest RJ & Reiber JHC (2007), Automated contour detection in cardiac MRI using active appearance models - The effect of the composition of the training set, Investigative Radiology 42(10).
- Kok P, Dijkstra J, Botha CP, Post FH, Kaijzel E, Quec I, Lowik CWGM, Reiber JHC & Lelieveldt BPF (2007), Integrated visualization of multi-angle bioluminescence imaging and micro CT - art. no. 65091U, Medical Imaging 2007: Visualization and Image-Guided Procedures, Pts 1 and 2 6509: U5091-U5091.
- Milles J, van der Geest RJ, Jerosch-Herold M, Reiber JHC & Lelieveldt BPF (2007), Fully automated registration of first-pass myocardial perfusion MRI using independent component analysis, INFORMATION PROCESSING IN MEDICAL IMAGING, PROCEEDINGS 4584: 544-555.
- Lowik CW, Kaijzel EL, Que I, Van der Pluijm G, Kok P, Lelieveldt BP & Dijkstra J (2007), Non-invasive 3D multi-modality imaging of tumor progression and osteolytic bone metastases in mouse models of cancer, BONE 40(6).
- Adame IM, de Koning PJH, Lelieveldt BPF, Wasserman BA, Reiber JHC & van der Geest RJ (2006), An integrated automated analysis method for quantifying vessel stenosis and plaque burden from carotid MRI images - Combined postprocessing of MRA and vessel wall MR, Stroke 37(8).
- Milles J, van der Geest RJ, Jerosch-Herold M, Reiber JHC & Lelieveldt BPF (2006), Analysis of first-pass myocardial perfusion MRI using Independent Component Analysis - art. no. 61441R, Medical Imaging 2006: Image Processing, Pts 1-3 6144: R1441-R1441.
- Uzumcu M, van der Geest RJ, Swingen C, Reiber JHC & Lelieveldt BPF (2006), Time continuous tracking and segmentation of cardiovascular magnetic resonance images using multidimensional dynamic programming, Investigative Radiology 41(1).
- Adame IM, van der Geest RJ, Bluemke DA, Lima JAC, Reiber JHC & Lelieveldt BPF (2006), Automatic vessel wall contour detection and quantification of wall thickness in in-vivo MR images of the human aorta, Journal of Magnetic Resonance Imaging 24(3).
- van Assen HC, Danilouchkine MG, Frangi AF, Ordas S, Westenberg JJM, Reiber JHC & Lelieveldt BR (2006), SPASM: A 3D-ASM for segmentation of sparse and arbitrarily oriented cardiac MRI data, Medical Image Analysis 10(2).
- Oost E, Koning G, Sonka M, Oemrawsingh PV, Reiber JHC & Lelieveldt BRF (2006), Automated contour detection in X-ray left ventricular angiograms using multiview active appearance models and dynamic programming, IEEE Transactions on Medical Imaging 25(9).
- Bosch JG, Nijland F, Mitchell SC, Lelieveldt BPF, Kamp O, Reiber JHC & Sonka M (2005), Computer-aided diagnosis via model-based shape analysis: Automated classification of wall motion abnormalities in echocardiograms, Academic Radiology 12(3).
- van Assen HC, Danilouchkine MG, Frangi AF, Ordas S, Westenberg JJM, Reiber JHC & Lelieveldt BPF (2005), SPASM: Segmentation of sparse and arbitrarily oriented cardiac MRI data using a 3D-ASM, Lecture Notes in Artificial Intelligence 3504.
- Danilouchkine MG, Westenberg JJM, van Assen HC, van Reiber JHC & Lelieveldt BPF (2005), 3D model-based approach to lung registration and prediction of respiratory cardiac motion, Lecture Notes in Artificial Intelligence 3750.
- Ordas S, van Assen HC, Boisrobert L, Laucelli M, Puente J, Lelieveldt BPF & Frangi AF (2005), Statistical modeling and segmentation in cardiac MRI using a grid computing approach, Lecture Notes in Artificial Intelligence 3470.
- Danilouchkine MG, Admiraal-Behloul F, van der Geest RJ, Lelieveldt BPF & Reiber JHC (2005), Automated quantification of cardiac short-axis multi-slice CT images for assessment of left ventricular global function., Medical Imaging 2005: Image Processing, Pt 1-3 5747: 463-474.
- Danilouchkine MG, Westenberg JJM, Reiber JHC & Lelieveldt BPF (2005), Accuracy of short-axis cardiac MRI automatically derived from scout acquisitions in free-breathing and breath-holding modes, Magnetic Resonance Materials in Physics, Biology and Medicine 18(1).
- Oost E, Koning G, Sonka M, Reiber JHC & Lelieveldt BPF (2005), Automated segmentation of X-ray left ventricular angiograms using multi-view active appearance models and dynamic programming, Lecture Notes in Artificial Intelligence 3504.
- Danilouchkine MG, van der Geest RJ, Westenberg JJM, Lelieveldt BPF & Reiber JHC (2005), Influence of positional and angular variation of automatically planned short-axis stacks on quantification of left ventricular dimensions and function with cardiovascular magnetic resonance, Journal of Magnetic Resonance Imaging 22(6).
- Uzumcu M, van der Geest RJ, Sonka M, Lamb HJ, Reiber JHC & Lelieveldt BPF (2005), Multiview active appearance models for simultaneous segmentation of cardiac 2-and 4-chamber long-axis magnetic resonance images, Investigative Radiology 40(4).
- Suinesiaputra A, Frangi AF, Lamb HJ, Reiber JHC & Lelieveldt BPF (2005), Automatic prediction of myocardial contractility improvement in stress MRI using shape morphometrics with independent component analysis, Lecture Notes in Artificial Intelligence 3565.
- Danilouchkine MG, Westenberg JJM, de Roos A, Reiber JHC & Lelieveldt BPF (2005), Operator induced variability in cardiovascular MR: left ventricular measurements and their reproducibility, Journal of Cardiovascular Magnetic Resonance 7(2).
- Blok M, Danilouchkine MG, Veenman CJ, Admiraal-Behloul F, Hendriks EA, Reiber JHC & Lelieveldt BPF (2005), Long-axis cardiac MRI contour detection with adaptive virtual exploring robot, Lecture Notes in Artificial Intelligence 3504.
- Suinesiaputra A, Uzumcu M, Frangi AF, Kaandorp TAM, Reiber JHC & Lelieveldt BPF (2004), Detecting regional abnormal cardiac contraction in short-axis MR images using independent component analysis, Lecture Notes in Artificial Intelligence 3216.
- Adame IM, van der Geest RJ, Wasserman BA, Mohamed M, Reiber JH & Lelieveldt BPF (2004), Automatic plaque characterization and vessel wall segmentation in magnetic resonance images of atherosclerotic carotid arteries, MEDICAL IMAGING 2004: IMAGE PROCESSING, PTS 1-3 5370: 265-273.
- Admiraal-Behloul F, Lelieveldt BPF, Ferrarini L, Olofsen H, van der Geest RJ & Reiber JHC (2004), A virtual exploring mobile robot for left ventricle contour tracking, 2004 IEEE INTERNATIONAL JOINT CONFERENCE ON NEURAL NETWORKS, VOLS 1-4, PROCEEDINGS: 333-338.
- Suinesiaputra A, Frangi AF, Uzumcu M, Reiber JHC & Lelieveldt BPF (2004), Extraction of myocardial contractility patterns from short-axes MR images using independent component analysis, Lecture Notes in Artificial Intelligence 3117.
- van der Geest RJ, Lelieveldt BPF, Angelie E, Danilouchkine M, Swingen C, Sonka M & Reiber JHC (2004), Evaluation of a new method for automated detection of left ventricular boundaries in time series of magnetic resonance images using an active appearance motion model, Journal of Cardiovascular Magnetic Resonance 6(3).
- Adame IM, van der Geest RJ, Wasserman BA, Mohamed MA, Reiber JHC & Lelieveldt BPF (2004), Automatic segmentation and plaque characterization in atherosclerotic carotid artery MR images, Magnetic Resonance Materials in Physics, Biology and Medicine 16(5).
- Danilouchkine MG, Westenberg JJM, Reiber JHC & Lelieveldt BPF (2004), Automated short-axis cardiac magnetic resonance image acquisitions - Accuracy of left ventricular dimension measurements in normal subjects and patients, Investigative Radiology 39(12).
- Lelieveldt BPF, Uzumcu M, van der Geest RJ, Reiber JHC & Sonka M (2003), Multi-view active appearance models for consistent segmentation of multiple standard views: application to long- and short-axis cardiac MR images, CARS 2003: COMPUTER ASSISTED RADIOLOGY AND SURGERY, PROCEEDINGS 1256: 1141-1146.
- van Assen HC, van der Geest RJ, Danilouchkine MG, Lamb HJ, Reiber JHC & Lelieveldt BPF (2003), 3D active shape model matching for left ventricle segmentation in cardiac CT, MEDICAL IMAGING 2003: IMAGE PROCESSING, PTS 1-3 5032: 384-393.
- Danilouchkine MG, Westenberg JJM, Lamb HJ, Reiber JHC & Lelieveldt BPF (2003), Accuracy of fully automatic vs. manual planning of cardiac MR acquisitions, Lecture Notes in Artificial Intelligence 2879.
- Bosch JG, Nijland F, Mitchell SC, Lelieveldt BPF, Kamp O, Sonka M & Reiber JHC (2003), Automated classification of wall motion abnormalities by Principal Component Analysis of endocardial shape motion patterns in echocardiograms, MEDICAL IMAGING 2003: IMAGE PROCESSING, PTS 1-3 5032: 38-49.
- Uzumcu M, Frangi AF, Reiber JHC & Lelieveldt BPF (2003), Independent component analysis in statistical shape models, MEDICAL IMAGING 2003: IMAGE PROCESSING, PTS 1-3 5032: 375-383.
- Oost E, Lelieveldt BPF, Koning G, Sonka M & Reiber JHC (2003), Left ventricle contour detection in x-ray angiograms using multi-view active appearance models, MEDICAL IMAGING 2003: IMAGE PROCESSING, PTS 1-3 5032: 394-404.
- Oost CR, Lelieveldt BPF, Uzumcu M, Lamb H, Reiber JHC & Sonka M (2003), Multi-view active appearance models: Application to X-ray LV angiography and cardiac MRI, Lecture Notes in Artificial Intelligence 2732.
- Uzumcu M, Frangi AF, Sonka M, Reiber JHC & Lelieveldt BPF (2003), ICA vs. PCA active appearance models: Application to cardiac MR segmentation, Lecture Notes in Artificial Intelligence 2878.
- Suinesiaputra A, Florack LMJ, Westenberg JJM, Romeny BMT, Reiber JHC & Lelieveldt BPF (2003), Optic flow computation from cardiac MR tagging using a multiscale differential method a comparative study with velocity-encoded MRI, Lecture Notes in Artificial Intelligence 2878.
- van Assen HC, Danilouchkine MG, Behloul F, Lamb HJ, van der Geest RJ, Reiber JHC & Lelieveldt BPF (2003), Cardiac LV segmentation using a 3D active shape model driven by fuzzy inference, Lecture Notes in Artificial Intelligence 2878.
- Mitchell SC, Bosch JG, Lelieveldt BPF, van der Geest RJ, Reiber JHC & Sonka M (2002), 3-D active appearance models: Segmentation of cardiac MR and ultrasound images, IEEE Transactions on Medical Imaging 21(9).
- Lelieveldt BPF, Mitchell SC, Bosch JG, van der Geest RJ, Sonka M & Reiber JHC (2002), 3D active appearance models: application to cardiac MR and ultrasound image segmentation, CARS 2002: COMPUTER ASSISTED RADIOLOGY AND SURGERY, PROCEEDINGS: 897-901.
- Behloul F, Lelieveldt BPF, Boudraa A & Reiber JHC (2002), Optimal design of radial basis function neural networks for fuzzy-rule extraction in high dimensional data, Pattern Recognition 35(3).
- Bosch JG, Mitchell SC, Lelieveldt BPF, Nijland F, Kamp O, Sonka M & Reiber JHC (2002), Fully automated endocardial contour detection in time sequences of echocardiograms by three-dimensional Active Appearance Models, MEDICAL IMAGING 2002: IMAGE PROCESSING, VOL 1-3 4684: 452-462.
- Bosch JG, Mitchell SC, Lelieveldt BPF, Nijland F, Kamp O, Sonka M & Reiber JHC (2002), Automatic segmentation of echocardiographic sequences by active appearance motion models, IEEE Transactions on Medical Imaging 21(11).
- Behloul F, Boudraa A, Lelieveldt BPF, Janier M & Reiber JHC (2001), Myocardium extraction in positron emission tomography based on soft computing, Computerized Medical Imaging and Graphics 25(3).
- Bosch JG, Mitchell SC, Lelieveldt BPF, Nijland F, Kamp O, Sonka M & Reiber JHC (2001), Fully automated endocardial border detection in sequences of echocardiograms by active appearance-motion models, Circulation 104(17): 652-652.
- Bosch JG, Mitchell SC, Lelieveldt BPF, Nijland F, Kamp O, Sonka M & Reiber JHC (2001), Fully automated endocardial contour detection in time sequences of echocardiograms by active appearance motion models, COMPUTERS IN CARDIOLOGY 2001, VOL 28 28: 93-96.
- Mitchell SC, Lelieveldt BPF, van der Geest RJ, Bosch HG, Reiber JHC & Sonka M (2001), Multistage hybrid active appearance model matching: Segmentation of left and right ventricles in cardiac MR images, IEEE Transactions on Medical Imaging 20(5).
- Bosch HG, Mitchell SC, Lelieveldt BPF, Nijland F, Kamp O, Sonka M & Reiber JHC (2001), Active Appearance-Motion Models for endocardial contour detection in time sequences of echocardiograms, MEDICAL IMAGING: 2001: IMAGE PROCESSING, PTS 1-3 2(27): 257-268.
- Bosch HG, Mitchell SC, Lelieveldt BPF, Nijland F, Kamp O, Milan S & Reiber JHC (2001), Active Appearance-Motion Models for fully automated endocardial contour detection in time sequences of echocardiograms, CARS 2001: COMPUTER ASSISTED RADIOLOGY AND SURGERY 1230: 896-901.
- Behloul F, Lelieveldt BPF, Boudraa A, Janier MF, Revel D & Reiber JHC (2001), Neuro-fuzzy systems for computer-aided myocardial viability assessment, IEEE Transactions on Medical Imaging 20(12).
- Lelieveldt BPF, van der Geest RJ, Lamb HJ, Kayser HWM & Reiber JHC (2001), Automated observer-independent acquisition of cardiac short-axis MR images: A pilot study, Radiology 221(2).
- Lelieveldt BPF, Mitchell SC, van der Geest RJ, Bosch HG, Sonka M & Reiber JHC (2001), Time continuous segmentation of cardiac MR images using Active Appearance Motion Models, CARS 2001: COMPUTER ASSISTED RADIOLOGY AND SURGERY 1230: 917-921.
- Lelieveldt BPF, Mitchell SC, Bosch JG, Sonka M, Reiber JHC & Van der Geest RJ (2001), Time-continuous automated contour detection of the endo- and epicardium in short-axis cardiac MR image sequences, European Heart Journal 22: 352-352.
- Bosch HG, Mitchell SC, Lelieveldt BP, Sonka M, Nijlandt F & Reiber JHC (2000), Feasibility of fully automated border detection on stress echocardiograms by active appearance models., Circulation 102(18): 633-633.
- Lelieveldt BPF, Sonka M, Bolinger L, Scholz TD, Kayser H, van der Geest R & Reiber JHC (2000), Anatomical modeling with fuzzy implicit surface templates: Application to automated localization of the heart and lungs in thoracic MR volumes, Computer Vision and Image Understanding 80(1).
- Rezaee MR, van der Zwet PMJ, Lelieveldt BPF, van der Geest RJ & Reiber JHC (2000), A multiresolution image segmentation technique based on pyramidal segmentation and fuzzy clustering.
- Behloul F, Janier M, Lelieveldt BPF & Reiber JHC (2000), A neuro-fuzzy system for automatic assessment of myocardial viability in positron emission tomography, IJCNN 2000: PROCEEDINGS OF THE IEEE-INNS-ENNS INTERNATIONAL JOINT CONFERENCE ON NEURAL NETWORKS, VOL I: 354-359.
- Lelieveldt BPF, Sonka M, Bolinger L, Scholz TD, Kayser HWM, van der Geest RJ & Reiber JHC (1999), Anatomical modeling with fuzzy implicit surfaces: Application to automated localization of the heart and lungs in thoracic MR images, Lecture Notes in Artificial Intelligence 1613: 400-405.
- Deeltijd Medical Delta Hoogleraar